ENSMODG00000003850 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000003850 T39068_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.752
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.752
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.752
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.729
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.729
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000004717 RRM 30 100
ENSMODP00000004717 RRM 116 186
ENSMODP00000004717 RRM 251 321
ENSMODP00000027604 RRM 59 129
ENSMODP00000027604 RRM 145 215
ENSMODP00000027604 RRM 280 350

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.752
AAA96943 Xenopus laevis AAA96943 I 0.726
AAA96944 Xenopus laevis AAA96944 I 0.721
AAA96945 Xenopus laevis AAA96945 I 0.752
AAH94189 Xenopus laevis AAH94189 I 0.729
AAH99348 Xenopus laevis AAH99348 I 0.752
AAI69769 Xenopus laevis AAI69769 I 0.721
AAI70539 Xenopus laevis AAI70539 I 0.729
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.729
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.724
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.752
CAA59430 Xenopus laevis CAA59430 I 0.721
CBF67567 Xenopus laevis CBF67567 I 0.752
CBU92440 Xenopus laevis CBU92440 I 0.752
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.729
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.729
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.715
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.729
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.724
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.734
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.729
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.729
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.729
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.729
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.729
Elavl2 Mus musculus ENSMUSG00000008489 I 0.729
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.729
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.729
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.729
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.724
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.728
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.729
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.729
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.729
ELAVL2 Equus caballus ENSECAG00000020142 I 0.729
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.729
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.729
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.729
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.729
ELAVL2 Homo sapiens ENSG00000107105 D 0.729
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.701
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.729
elavl2 Danio rerio ENSDARG00000040732 I 0.734
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.724
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.728
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.701
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.724
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.718
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.720
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.724
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.724
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.738
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.731
ELAVL3 Homo sapiens ENSG00000196361 I 0.724
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.738
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.724
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.724
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.721
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.720
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.724
elavl3 Danio rerio ENSDARG00000014420 I 0.738
Elavl3 Mus musculus ENSMUSG00000003410 I 0.720
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.710
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.716
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.724
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.752
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.752
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.752
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.752
ELAVL4 Homo sapiens ENSG00000162374 D 0.752
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.752
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.752
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.752
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.752
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.752
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.752
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.752
elavl4 Danio rerio ENSDARG00000045639 I 0.750
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.752
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.752
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.752
Elavl4 Mus musculus ENSMUSG00000028546 I 0.752
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.752
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.752
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.752
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.752
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.752
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.752
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.752
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.752
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.752
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.752
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.749
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.752
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.752
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.752
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.752
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.752
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.752
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.752
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.729
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.729
LOC100051268 Equus caballus ENSECAG00000022284 I 0.752
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.729
Q91584 Xenopus laevis Q91584 I 0.721
Q91903 Xenopus laevis Q91903 I 0.726
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.752