AAA96943 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA96943 T59429_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.991
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.991
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.991
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.958
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.958
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.958
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.793
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.793
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.793
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.793
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.793
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.793
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.724
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA96943 RRM 68 139
AAA96943 RRM 155 223
AAA96943 RRM 308 378

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q91903 Xenopus laevis Q91903 I 1.000
CAA59430 Xenopus laevis CAA59430 I 0.995
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.995
AAH94189 Xenopus laevis AAH94189 I 0.995
AAI70539 Xenopus laevis AAI70539 I 0.995
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.995
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.991
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.991
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.991
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.991
Elavl2 Mus musculus ENSMUSG00000008489 I 0.991
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.991
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.991
ELAVL2 Equus caballus ENSECAG00000020142 I 0.991
ELAVL2 Homo sapiens ENSG00000107105 D 0.991
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.991
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.991
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.991
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.991
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.991
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.991
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.991
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.991
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.991
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.991
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.991
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.991
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.986
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.986
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.972
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.972
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.972
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.967
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.962
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.958
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.958
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.958
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.958
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.958
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.958
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.958
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.958
ELAVL4 Homo sapiens ENSG00000162374 D 0.958
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.958
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.958
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.958
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.958
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.958
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.958
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.958
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.958
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.958
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.958
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.958
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.958
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.958
Elavl4 Mus musculus ENSMUSG00000028546 I 0.958
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.958
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.958
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.958
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.958
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.958
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.958
elavl2 Danio rerio ENSDARG00000040732 I 0.958
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.958
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.958
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.958
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.958
LOC100051268 Equus caballus ENSECAG00000022284 I 0.958
AAH99348 Xenopus laevis AAH99348 I 0.953
AAA96945 Xenopus laevis AAA96945 I 0.953
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.953
CBF67567 Xenopus laevis CBF67567 I 0.953
CBU92440 Xenopus laevis CBU92440 I 0.953
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.948
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.948
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.944
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.943
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.943
elavl4 Danio rerio ENSDARG00000045639 I 0.935
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.911
Q91584 Xenopus laevis Q91584 I 0.911
AAI69769 Xenopus laevis AAI69769 I 0.911
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.911
AAA96944 Xenopus laevis AAA96944 I 0.911
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.906
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.902
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.901
ELAVL3 Homo sapiens ENSG00000196361 I 0.901
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.901
elavl3 Danio rerio ENSDARG00000014420 I 0.901
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.901
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.901
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.901
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.901
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.901
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.901
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.901
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.901
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.901
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.893
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.893
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.892
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.892
Elavl3 Mus musculus ENSMUSG00000003410 I 0.892
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.883
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.873
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.873
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.873
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.836
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.831
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.825
LOC100056901 Equus caballus ENSECAG00000020594 I 0.822
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.812
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.812
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.812
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.811
hug Danio rerio ENSDARG00000016405 I 0.808
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.803
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.803
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.803
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.803
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.798
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.798
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.795
ELAVL1 Felis catus ENSFCAG00000014947 I 0.793
ELAVL1 Homo sapiens ENSG00000066044 D 0.793
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.793
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.793
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.793
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.793
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.793
Elavl1 Mus musculus ENSMUSG00000040028 I 0.793
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.793
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.793
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.793
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.793
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.793
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.793
elavl1 Danio rerio ENSDARG00000038695 I 0.793
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.793
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.793
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.792
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.789
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.789
AAA96942 Xenopus laevis AAA96942 I 0.789
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.789
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.789
LOC100060819 Equus caballus ENSECAG00000019459 I 0.789
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.789
Q5U259 Xenopus laevis Q5U259 I 0.784
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.784
AAH86269 Xenopus laevis AAH86269 I 0.784
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.780
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.779
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.775
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.775
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.770
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.765
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.765
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.765
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.765
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.756
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.756
AAI16460 Xenopus laevis AAI16460 I 0.753
Q1JQ73 Xenopus laevis Q1JQ73 I 0.753
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.751
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.751
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
AGAP000965 Anopheles gambiae AGAP000965 I 0.746
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.742
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.738
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.737
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.737
Rbp9 Drosophila melanogaster FBgn0010263 D 0.737
GL26299 Drosophila persimilis FBgn0163881 I 0.732
GH13638 Drosophila grimshawi FBgn0121114 I 0.728
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.726
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.724
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.719
GK14865 Drosophila willistoni FBgn0216870 I 0.719
GG24901 Drosophila erecta FBgn0117030 I 0.719
GM18380 Drosophila sechellia FBgn0173287 I 0.719
GJ13991 Drosophila virilis FBgn0201209 I 0.719
GF14992 Drosophila ananassae FBgn0092017 I 0.719
GE18193 Drosophila yakuba FBgn0235624 I 0.719
GI11879 Drosophila mojavensis FBgn0134637 I 0.719
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.716
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.716
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.715