elavl4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000008680 T42853_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.995
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.995
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.995
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.953
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.953
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.953
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.774
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.774
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.774
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.774
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.774
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.731
fne
M115_0.6 		Drosophila melanogaster UUKDGUU RNAcompete
Ray et al.(2013)
RNCMPT00120 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000018998 RRM 48 89
ENSXETP00000018998 RRM 108 147
ENSXETP00000018998 RRM 163 231
ENSXETP00000018998 RRM 314 384
ENSXETP00000019000 RRM 48 118
ENSXETP00000019000 RRM 134 202
ENSXETP00000019000 RRM 285 355

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

207 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBF67567 Xenopus laevis CBF67567 I 1.000
AAH99348 Xenopus laevis AAH99348 I 1.000
CBU92440 Xenopus laevis CBU92440 I 1.000
AAA96945 Xenopus laevis AAA96945 I 1.000
Q7SZT7 Xenopus laevis Q7SZT7 I 0.995
AAH56021 Xenopus laevis AAH56021 I 0.995
AAH43735 Xenopus laevis AAH43735 I 0.995
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.995
LOC100051268 Equus caballus ENSECAG00000022284 I 0.995
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.995
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.995
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.995
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.995
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.995
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.995
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.995
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.995
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.995
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.995
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.995
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.995
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.995
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.995
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.995
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.995
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.995
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.995
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.995
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.995
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.995
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.995
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.995
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.995
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.995
Elavl4 Mus musculus ENSMUSG00000028546 I 0.995
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.995
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.995
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.995
ELAVL4 Homo sapiens ENSG00000162374 D 0.995
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.995
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.991
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.991
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.991
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.991
elavl4 Danio rerio ENSDARG00000045639 I 0.981
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.957
AAI70539 Xenopus laevis AAI70539 I 0.957
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.957
AAH94189 Xenopus laevis AAH94189 I 0.957
Q91903 Xenopus laevis Q91903 I 0.953
AAA96943 Xenopus laevis AAA96943 I 0.953
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.953
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.953
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.953
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.953
ELAVL2 Equus caballus ENSECAG00000020142 I 0.953
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.953
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.953
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.953
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.953
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.953
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.953
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.953
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.953
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.953
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.953
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.953
ELAVL2 Homo sapiens ENSG00000107105 D 0.953
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.953
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.953
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.953
Elavl2 Mus musculus ENSMUSG00000008489 I 0.953
CAA59430 Xenopus laevis CAA59430 I 0.948
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.948
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.948
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.938
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.934
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.934
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.934
elavl2 Danio rerio ENSDARG00000040732 I 0.929
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.924
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.920
AAA96944 Xenopus laevis AAA96944 I 0.915
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.915
Q91584 Xenopus laevis Q91584 I 0.915
AAI69769 Xenopus laevis AAI69769 I 0.915
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.911
ELAVL3 Homo sapiens ENSG00000196361 I 0.911
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.911
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.911
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.911
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.911
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.911
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.911
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.911
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.911
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.911
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.911
elavl3 Danio rerio ENSDARG00000014420 I 0.911
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.911
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.907
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.906
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.902
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.902
Elavl3 Mus musculus ENSMUSG00000003410 I 0.901
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.901
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.897
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.892
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.892
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.878
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.869
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.840
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.840
LOC100056901 Equus caballus ENSECAG00000020594 I 0.831
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.831
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.808
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.807
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.802
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.796
hug Danio rerio ENSDARG00000016405 I 0.793
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.792
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.783
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.783
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.783
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.779
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.778
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.778
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.778
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.778
elavl1 Danio rerio ENSDARG00000038695 I 0.775
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.775
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.774
Elavl1 Mus musculus ENSMUSG00000040028 I 0.774
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.774
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.774
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.774
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.774
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.774
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.774
ELAVL1 Felis catus ENSFCAG00000014947 I 0.774
ELAVL1 Homo sapiens ENSG00000066044 D 0.774
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.774
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.774
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.774
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.774
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.774
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.774
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.774
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.774
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.773
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.772
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.770
AAA96942 Xenopus laevis AAA96942 I 0.769
LOC100060819 Equus caballus ENSECAG00000019459 I 0.769
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.769
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.769
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.769
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.769
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.769
Q5U259 Xenopus laevis Q5U259 I 0.764
AAH86269 Xenopus laevis AAH86269 I 0.764
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.761
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.761
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.759
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.759
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.752
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.751
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.751
AGAP000965 Anopheles gambiae AGAP000965 I 0.750
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.746
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
Rbp9 Drosophila melanogaster FBgn0010263 D 0.745
GL26299 Drosophila persimilis FBgn0163881 I 0.741
GH13638 Drosophila grimshawi FBgn0121114 I 0.736
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.732
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.732
Q1JQ73 Xenopus laevis Q1JQ73 I 0.731
AAI16460 Xenopus laevis AAI16460 I 0.731
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.728
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.728
GG24901 Drosophila erecta FBgn0117030 I 0.727
GJ13991 Drosophila virilis FBgn0201209 I 0.727
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.727
GM18380 Drosophila sechellia FBgn0173287 I 0.727
GK14865 Drosophila willistoni FBgn0216870 I 0.727
GI11879 Drosophila mojavensis FBgn0134637 I 0.727
GF14992 Drosophila ananassae FBgn0092017 I 0.727
GE18193 Drosophila yakuba FBgn0235624 I 0.727
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.723
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.723
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.723
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.723
DGIL_AUG5s1005g4t1 Acyrtosiphon pisum DGIL_AUG5s1005g4t1 I 0.716
AAEL006675 Aedes aegypti AAEL006675 I 0.714
PHUM065370 Pediculus humanus PHUM065370 I 0.713
fne Drosophila melanogaster FBgn0086675 D 0.709
GF21392 Drosophila ananassae FBgn0098394 I 0.709
GJ16518 Drosophila virilis FBgn0203702 I 0.704
GK25647 Drosophila willistoni FBgn0227606 I 0.704
GA22283-RA Drosophila pseudoobscura FBgn0243690 I 0.704
GL22975 Drosophila persimilis FBgn0160565 I 0.704
GI16282 Drosophila mojavensis FBgn0139031 I 0.704
GG17743 Drosophila erecta FBgn0109965 I 0.704
GH24423 Drosophila grimshawi FBgn0131879 I 0.704
fne Drosophila yakuba FBgn0067971 I 0.704