AAA96944 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA96944 T59430_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.925
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.925
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.925
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.915
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.915
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.915
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.755
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.755
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.755
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.755
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.755
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.755
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA96944 RRM 36 106
AAA96944 RRM 122 190
AAA96944 RRM 267 337

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

192 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI69769 Xenopus laevis AAI69769 I 1.000
Q91584 Xenopus laevis Q91584 I 1.000
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.991
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.986
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.981
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.962
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.962
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.962
elavl3 Danio rerio ENSDARG00000014420 I 0.962
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.958
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.958
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.958
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.958
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.958
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.958
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.958
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.958
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.958
ELAVL3 Homo sapiens ENSG00000196361 I 0.958
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.958
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.948
Elavl3 Mus musculus ENSMUSG00000003410 I 0.948
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.943
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.939
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.929
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.915
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.915
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.915
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.915
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.915
CBF67567 Xenopus laevis CBF67567 I 0.915
ELAVL4 Homo sapiens ENSG00000162374 D 0.915
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.915
CBU92440 Xenopus laevis CBU92440 I 0.915
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.915
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.915
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.915
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.915
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.915
AAH99348 Xenopus laevis AAH99348 I 0.915
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.915
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.915
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.915
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.915
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.915
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.915
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.915
LOC100051268 Equus caballus ENSECAG00000022284 I 0.915
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.915
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.915
AAA96945 Xenopus laevis AAA96945 I 0.915
Elavl4 Mus musculus ENSMUSG00000028546 I 0.915
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.915
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.915
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.915
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.915
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.915
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.915
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.915
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.915
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.915
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.915
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.915
AAH94189 Xenopus laevis AAH94189 I 0.911
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.911
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.911
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.911
AAA96943 Xenopus laevis AAA96943 I 0.911
AAI70539 Xenopus laevis AAI70539 I 0.911
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.911
Q91903 Xenopus laevis Q91903 I 0.911
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.906
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.906
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.906
Elavl2 Mus musculus ENSMUSG00000008489 I 0.906
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.906
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.906
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.906
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.906
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.906
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.906
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.906
ELAVL2 Homo sapiens ENSG00000107105 D 0.906
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.906
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.906
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.906
ELAVL2 Equus caballus ENSECAG00000020142 I 0.906
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.906
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.906
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.906
CAA59430 Xenopus laevis CAA59430 I 0.906
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.906
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.906
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.906
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.906
elavl4 Danio rerio ENSDARG00000045639 I 0.902
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.901
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.901
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.897
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.897
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.897
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.897
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.892
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.892
elavl2 Danio rerio ENSDARG00000040732 I 0.887
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.887
LOC100056901 Equus caballus ENSECAG00000020594 I 0.877
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.854
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.849
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.821
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.816
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.792
hug Danio rerio ENSDARG00000016405 I 0.778
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.775
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.775
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.774
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.770
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.769
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.765
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.761
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.761
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.757
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.756
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.756
elavl1 Danio rerio ENSDARG00000038695 I 0.755
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.755
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.755
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.752
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.751
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.751
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.751
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.751
ELAVL1 Felis catus ENSFCAG00000014947 I 0.751
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.751
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.751
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.751
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.751
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.751
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.751
ELAVL1 Homo sapiens ENSG00000066044 D 0.751
Elavl1 Mus musculus ENSMUSG00000040028 I 0.751
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.751
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.751
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.751
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.751
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.751
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.751
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.750
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.750
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.746
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.746
LOC100060819 Equus caballus ENSECAG00000019459 I 0.746
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.746
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.746
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.746
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.746
AAA96942 Xenopus laevis AAA96942 I 0.742
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.742
Q5U259 Xenopus laevis Q5U259 I 0.737
AAH86269 Xenopus laevis AAH86269 I 0.737
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.737
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.737
AGAP000965 Anopheles gambiae AGAP000965 I 0.732
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.732
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.732
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.722
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.722
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.721
ENSPPYG00000009583 Pongo pygmaeus ENSPPYG00000009583 N 0.720
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.718
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.717
GL26299 Drosophila persimilis FBgn0163881 I 0.714
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.712
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.710
GH13638 Drosophila grimshawi FBgn0121114 I 0.709
Rbp9 Drosophila melanogaster FBgn0010263 D 0.709
AAI16460 Xenopus laevis AAI16460 I 0.709
Q1JQ73 Xenopus laevis Q1JQ73 I 0.709
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.708
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.706
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.703
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.702
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.702
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.701
GK14865 Drosophila willistoni FBgn0216870 I 0.700
GG24901 Drosophila erecta FBgn0117030 I 0.700
GF14992 Drosophila ananassae FBgn0092017 I 0.700
GI11879 Drosophila mojavensis FBgn0134637 I 0.700
GM18380 Drosophila sechellia FBgn0173287 I 0.700
GE18193 Drosophila yakuba FBgn0235624 I 0.700
GJ13991 Drosophila virilis FBgn0201209 I 0.700
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.700