elavl3 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000016741 T42909_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.916
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.916
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.916
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.907
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.907
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.907
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.751
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.751
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.751
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.751
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.751
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.751
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000036509 RRM 36 106
ENSXETP00000036509 RRM 122 192
ENSXETP00000036509 RRM 262 332

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

190 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI69769 Xenopus laevis AAI69769 I 0.991
AAA96944 Xenopus laevis AAA96944 I 0.991
Q91584 Xenopus laevis Q91584 I 0.991
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.977
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.972
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.962
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.958
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.958
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.958
elavl3 Danio rerio ENSDARG00000014420 I 0.958
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.953
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.953
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.953
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.953
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.953
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.953
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.953
ELAVL3 Homo sapiens ENSG00000196361 I 0.953
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.953
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.953
Elavl3 Mus musculus ENSMUSG00000003410 I 0.944
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.944
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.939
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.934
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.925
Elavl4 Mus musculus ENSMUSG00000028546 I 0.907
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.907
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.907
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.907
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.907
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.907
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.907
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.907
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.907
LOC100051268 Equus caballus ENSECAG00000022284 I 0.907
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.907
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.907
ELAVL4 Homo sapiens ENSG00000162374 D 0.907
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.907
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.907
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.907
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.907
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.907
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.907
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.907
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.907
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.907
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.907
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.907
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.907
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.907
CBU92440 Xenopus laevis CBU92440 I 0.907
CBF67567 Xenopus laevis CBF67567 I 0.907
AAA96945 Xenopus laevis AAA96945 I 0.907
AAH99348 Xenopus laevis AAH99348 I 0.907
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.907
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.907
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.907
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.907
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.907
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.907
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.907
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.907
AAH94189 Xenopus laevis AAH94189 I 0.902
AAA96943 Xenopus laevis AAA96943 I 0.902
AAI70539 Xenopus laevis AAI70539 I 0.902
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.902
Q91903 Xenopus laevis Q91903 I 0.902
elavl4 Danio rerio ENSDARG00000045639 I 0.902
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.902
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.902
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.902
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.898
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.898
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.898
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.898
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.898
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.898
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.898
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.898
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.898
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.898
Elavl2 Mus musculus ENSMUSG00000008489 I 0.898
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.898
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.898
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.898
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.898
ELAVL2 Equus caballus ENSECAG00000020142 I 0.898
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.898
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.898
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.898
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.898
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.898
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.898
CAA59430 Xenopus laevis CAA59430 I 0.898
ELAVL2 Homo sapiens ENSG00000107105 D 0.898
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.893
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.893
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.893
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.888
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.888
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.888
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.888
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.884
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.883
elavl2 Danio rerio ENSDARG00000040732 I 0.879
LOC100056901 Equus caballus ENSECAG00000020594 I 0.873
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.850
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.845
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.817
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.812
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.789
hug Danio rerio ENSDARG00000016405 I 0.775
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.771
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.771
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.770
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.766
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.765
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.762
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.757
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.757
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.757
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.753
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.752
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.752
elavl1 Danio rerio ENSDARG00000038695 I 0.751
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.748
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.748
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.748
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.748
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.748
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.748
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.748
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.748
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.748
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.748
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.748
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.748
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.748
ELAVL1 Homo sapiens ENSG00000066044 D 0.748
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.748
ELAVL1 Felis catus ENSFCAG00000014947 I 0.748
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.748
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.748
Elavl1 Mus musculus ENSMUSG00000040028 I 0.748
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.748
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.748
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.746
LOC100060819 Equus caballus ENSECAG00000019459 I 0.743
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.743
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.743
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.743
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.743
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.743
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.743
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.743
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.738
AAA96942 Xenopus laevis AAA96942 I 0.738
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.734
Q5U259 Xenopus laevis Q5U259 I 0.734
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.734
AAH86269 Xenopus laevis AAH86269 I 0.734
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.729
AGAP000965 Anopheles gambiae AGAP000965 I 0.729
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.729
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.718
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.718
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.718
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.715
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.714
ENSPPYG00000009583 Pongo pygmaeus ENSPPYG00000009583 N 0.714
GL26299 Drosophila persimilis FBgn0163881 I 0.710
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.710
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.709
GH13638 Drosophila grimshawi FBgn0121114 I 0.706
Rbp9 Drosophila melanogaster FBgn0010263 D 0.706
AAI16460 Xenopus laevis AAI16460 I 0.705
Q1JQ73 Xenopus laevis Q1JQ73 I 0.705
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.704
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.702
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.702
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.702
GF14992 Drosophila ananassae FBgn0092017 I 0.700
GG24901 Drosophila erecta FBgn0117030 I 0.700
GE18193 Drosophila yakuba FBgn0235624 I 0.700
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.700
GK14865 Drosophila willistoni FBgn0216870 I 0.700
GJ13991 Drosophila virilis FBgn0201209 I 0.700
GM18380 Drosophila sechellia FBgn0173287 I 0.700
GI11879 Drosophila mojavensis FBgn0134637 I 0.700