CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CG11266
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0031883
T43049_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0088577
RRM
30
100
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088577
RRM
199
255
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
FBpp0088578
RRM
30
100
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088578
RRM
199
255
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
FBpp0088579
RRM
239
308
VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIM
FBpp0088579
RRM
337
407
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088579
RRM
506
562
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
FBpp0088580
RRM
30
100
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088580
RRM
199
255
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
FBpp0088581
RRM
30
100
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088581
RRM
199
255
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
FBpp0088582
RRM
30
100
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088582
RRM
199
255
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
FBpp0088583
RRM
239
308
VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIM
FBpp0088583
RRM
337
407
LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMK
FBpp0088583
RRM
506
562
IRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVIT
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29889.m003364
Ricinus communis
29889.m003364
N
0.000
30169.m006347
Ricinus communis
30169.m006347
N
0.000
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.000
B9HX84_POPTR
Populus trichocarpa
POPTR_0010s16210
N
0.000
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.000
BGIOSIBCE010884
Oryza indica
BGIOSIBCE010884
N
0.000
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.000
BRADI2G12380
Brachypodium distachyon
BRADI2G12380
N
0.000
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.000
cassava17771.valid.m1
Manihot esculenta
cassava17771.valid.m1
N
0.000
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.000
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.000
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.000
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.000
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.000
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.000
ECT6
Arabidopsis thaliana
AT3G17330-TAIR-G
N
0.000
ECT7
Arabidopsis thaliana
AT1G48110-TAIR-G
N
0.000
Glyma07g36110.1
Glycine max
Glyma07g36110.1
N
0.000
Glyma09g03590.1
Glycine max
Glyma09g03590.1
N
0.000
Glyma15g14490.1
Glycine max
Glyma15g14490.1
N
0.000
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.000
GRMZM2G098174
Zea mays
GRMZM2G098174
N
0.000
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.000
gw1.181.55.1
Physcomitrella patens
gw1.181.55.1
N
0.000
LjSGA_011466.1
Lotus japonicus
LjSGA_011466.1
N
0.000
LjT10H22.120.nd
Lotus japonicus
LjT10H22.120.nd
N
0.000
LOC_Os01g22630
Oryza sativa
LOC_Os01g22630
N
0.000
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.000
LOC_Os03g20180
Oryza sativa
LOC_Os03g20180
N
0.000
MDP0000132385
Malus x domestica
MDP0000132385
N
0.000
MDP0000171737
Malus x domestica
MDP0000171737
N
0.000
MDP0000199885
Malus x domestica
MDP0000199885
N
0.000
MDP0000231231
Malus x domestica
MDP0000231231
N
0.000
MDP0000286471
Malus x domestica
MDP0000286471
N
0.000
MDP0000299155
Malus x domestica
MDP0000299155
N
0.000
MDP0000306387
Malus x domestica
MDP0000306387
N
0.000
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.000
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.000
mgf014143m
Mimulus guttatus
mgf014143m
N
0.000
mgf015583m
Mimulus guttatus
mgf015583m
N
0.000
mgf017987m
Mimulus guttatus
mgf017987m
N
0.000
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.000
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.000
PK02315.1
Cannabis sativa
PK02315.1
N
0.000
PK23104.1
Cannabis sativa
PK23104.1
N
0.000
ppa003664m
Prunus persica
ppa003664m
N
0.000
ppa018635m
Prunus persica
ppa018635m
N
0.000
SB07G000670
Sorghum bicolor
Sb07g000670
N
0.000
XM_002885156.1
Arabidopsis lyrata
Al_scaffold_0003_1823
N
0.000
XM_002894050.1
Arabidopsis lyrata
fgenesh2_kg.1__3903__AT1G48110.2
N
0.000