cassava25245.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava25245.valid.m1 T49236_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava25245.valid.m1 RRM 6 71

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29682.m000595 Ricinus communis 29682.m000595 N 0.851
30073.m002271 Ricinus communis 30073.m002271 N 0.794
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.851
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.725
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.721
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.809
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.735
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.750
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.971
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.750
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.739
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.739
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.721
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.721
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.721
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.710
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.779
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.779
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.735
MDP0000177505 Malus x domestica MDP0000177505 N 0.765
MDP0000596287 Malus x domestica MDP0000596287 N 0.735
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.791
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.750
mgf007506m Mimulus guttatus mgf007506m N 0.761
mgf014593m Mimulus guttatus mgf014593m N 0.721
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.706
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.735
PK05006.1 Cannabis sativa PK05006.1 N 0.809
ppa024222m Prunus persica ppa024222m N 0.721
SB01G010170 Sorghum bicolor Sb01g010170 N 0.710
SB10G000940 Sorghum bicolor Sb10g000940 N 0.735
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.721
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.725