PDK_20s1613681g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1613681g001 T58200_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1613681g001 RRM 8 74

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.851
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.851
SB10G000940 Sorghum bicolor Sb10g000940 N 0.836
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.836
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.836
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.821
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.821
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.821
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.806
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.806
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.806
29682.m000595 Ricinus communis 29682.m000595 N 0.791
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.791
PK05006.1 Cannabis sativa PK05006.1 N 0.791
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.776
MDP0000596287 Malus x domestica MDP0000596287 N 0.776
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.768
mgf007506m Mimulus guttatus mgf007506m N 0.761
30073.m002271 Ricinus communis 30073.m002271 N 0.761
mgf014593m Mimulus guttatus mgf014593m N 0.746
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.746
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.739
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.735
PDK_20s1330821g002 Phoenix dactylifera PDK_20s1330821g002 N 0.731
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.725
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.725
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.725
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.725
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.725
SB01G010170 Sorghum bicolor Sb01g010170 N 0.725
LOC_Os04g53330 Oryza sativa LOC_Os04g53330 N 0.716
BGIOSIBCE016670 Oryza indica BGIOSIBCE016670 N 0.716
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.710
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.710
MDP0000177505 Malus x domestica MDP0000177505 N 0.701