CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G127559
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G127559
T54133_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G127559_P01
RRM
6
72
VKVSNLSLNALKREITEFFSFSGDIEYVEMQSESEWSQLAYVTFKDSQGADTAVLLSGATIVDRAVI
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB01G010170
Sorghum bicolor
Sb01g010170
N
1.000
BRADI1G10760
Brachypodium distachyon
BRADI1G10760
N
0.940
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.940
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.940
GRMZM2G114789
Zea mays
GRMZM2G114789
N
0.899
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.761
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.761
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.739
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.731
PK05006.1
Cannabis sativa
PK05006.1
N
0.725
PDK_20s1613681g001
Phoenix dactylifera
PDK_20s1613681g001
N
0.725
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.725
GRMZM2G035719
Zea mays
GRMZM2G035719
N
0.716
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.716
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.710
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.710
GRMZM2G102808
Zea mays
GRMZM2G102808
N
0.710
BGIOSIBCE020376
Oryza indica
BGIOSIBCE020376
N
0.710
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.710
SB10G000940
Sorghum bicolor
Sb10g000940
N
0.710
LOC_Os06g02240
Oryza sativa
LOC_Os06g02240
N
0.710
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.710
PK28591.1
Cannabis sativa
PK28591.1
N
0.701
BRADI5G20150
Brachypodium distachyon
BRADI5G20150
N
0.701
MDP0000320634
Malus x domestica
MDP0000320634
N
0.701
ppa021083m
Prunus persica
ppa021083m
N
0.701