CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.15.72.1
(
Trichoderma atroviride
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.15.72.1
T49792_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.15.72.1
RRM
198
250
VYLGNIPPDTTAEEILGHVRSGQIESVRLLPDKNCAFISFLDASSATHFHSDA
e_gw1.15.72.1
RRM
289
346
VYLGNLPEEVSDEELREDLAKFGAIDTIKIVREKSIAFVHYLSIANAIKAVTQLPQEA
e_gw1.15.72.1
RRM
423
488
IYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTAAASFYALSNLQGLMIHNRRLK
e_gw1.15.72.1
RRM
514
578
VYIGNLDETWTEERLRQDFTEYGEIELVNALREKSCAFVNFTNIANAIKAIEAIRGKDEYKKFKV
Links
Other
RRM
family RBPs
Other
Trichoderma atroviride
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_068670
Aspergillus clavatus
CADACLAG00006690
N
0.868
AFLA_129820
Aspergillus flavus
CADAFLAG00010040
N
0.856
AFUA_2G05670
Aspergillus fumigatus
CADAFUAG00003365
N
0.872
An02g14100
Aspergillus niger
CADANGAG00002937
N
0.860
ANIA_07480
Aspergillus nidulans
CADANIAG00000573
N
0.844
AO090001000681
Aspergillus oryzae
CADAORAG00000620
N
0.852
ARB_03865
Arthroderma benhamiae
ARB_03865
N
0.860
ATEG_06757
Aspergillus terreus
CADATEAG00009116
N
0.864
BC1G_14118
Botrytis cinerea
BC1G_14118
N
0.893
BDBG_09466
Blastomyces dermatitidis
BDBG_09466
N
0.889
CHGG_05709
Chaetomium globosum
CHGG_05709
N
0.942
CIMG_00769
Coccidioides immitis
CIMG_00769
N
0.877
CPSG_07981
Coccidioides posadasii
CPSG_07981
N
0.873
EAT78895.1
Phaeosphaeria nodorum
EAT78895.1
N
0.897
estExt_fgenesh1_pg.C_260060
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_260060
N
0.897
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
Nectria haematococca
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
N
0.959
estExt_fgenesh1_pm.C_10719
Cryphonectria parasitica
estExt_fgenesh1_pm.C_10719
N
0.909
estExt_fgenesh1_pm.C_60118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_60118
N
0.930
estExt_fgenesh3_kg.C_190032
Neurospora discreta
estExt_fgenesh3_kg.C_190032
N
0.921
estExt_Genewise1.C_240173
Cochliobolus heterostrophus C5
estExt_Genewise1.C_240173
N
0.889
estExt_Genewise1.C_32212
Thielavia terrestris
estExt_Genewise1.C_32212
N
0.926
estExt_Genewise1Plus.C_chr_30420
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_30420
N
0.869
e_gw1.10.53.1
Trichoderma virens
e_gw1.10.53.1
N
0.979
e_gw1.17.287.1
Trichoderma reesei
e_gw1.17.287.1
N
0.963
fgenesh1_pg.4_#_772
Myceliophthora thermophila
fgenesh1_pg.4_#_772
N
0.930
fgenesh1_pm.00082_#_76
Aspergillus carbonarius
fgenesh1_pm.00082_#_76
N
0.868
FGSG_05444
Fusarium graminearum
FGSG_05444
N
0.934
FOXG_09455
Fusarium oxysporum
FOXG_09455
N
0.942
FVEG_07083
Fusarium verticillioides
FVEG_07083
N
0.942
GLRG_03643
Colletotrichum graminicola
GLRG_03643
N
0.930
GSTUMT00008077001
Tuber melanosporum
GSTUMT00008077001
N
0.897
MCYG_03534
Microsporum canis
MCYG_03534
N
0.872
MGG_08898
Magnaporthe oryzae
MGG_08898
N
0.922
MGYG_03143
Microsporum gypseum
MGYG_03143
N
0.860
NCU06459
Neurospora crassa
NCU06459
N
0.926
NFIA_082390
Neosartorya fischeri
CADNFIAG00007689
N
0.868
PABG_04754
Paracoccidioides brasiliensis
PABG_04754
N
0.893
Pa_7_9880
Podospora anserina
Pa_7_9880
N
0.922
Pc22g08880
Penicillium chrysogenum
Pc22g08880
N
0.856
PMAA_071470
Penicillium marneffei
PMAA_071470
N
0.872
PTRG_09392
Pyrenophora tritici repentis
PTRG_09392
N
0.909
SNOG_13871
Stagonospora nodorum
SNOG_13871
N
0.897
SS1G_13716
Sclerotinia sclerotiorum
SS1G_13716
N
0.897
TEQG_01254
Trichophyton equinum
TEQG_01254
N
0.860
TERG_04964
Trichophyton rubrum
TERG_04964
N
0.861
TESG_05970
Trichophyton tonsurans
TESG_05970
N
0.860
UREG_00743
Uncinocarpus reesii
UREG_00743
N
0.872
VDAG_06364
Verticillium dahliae
VDAG_06364
N
0.917
VDBG_08703
Verticillium albo atrum
VDBG_08703
N
0.888