estExt_fgenesh2_pg.C_4200008 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_4200008 T50858_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_4200008 RRM 397 467

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.000
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.000
Bm1_42995 Brugia malayi Bm1_42995 N 0.000
CBG01042 Caenorhabditis briggsae CBG01042 N 0.000
CBN06104 Caenorhabditis brenneri CBN06104 N 0.000
CJA15618 Caenorhabditis japonica CJA15618 N 0.000
CRE05188 Caenorhabditis remanei CRE05188 N 0.000
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.000
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.000
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.000
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.000
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.000
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.000
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.000
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.000
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.000
GD17488 Drosophila simulans FBgn0189040 N 0.000
GE17874 Drosophila yakuba FBgn0068478 N 0.000
GF20246 Drosophila ananassae FBgn0097253 N 0.000
GG19285 Drosophila erecta FBgn0111489 N 0.000
GH12628 Drosophila grimshawi FBgn0120107 N 0.000
GJ15820 Drosophila virilis FBgn0203007 N 0.000
GK20148 Drosophila willistoni FBgn0222145 N 0.000
GM23025 Drosophila sechellia FBgn0177893 N 0.000
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.000
LOAG_05624 Loa loa LOAG_05624 N 0.000
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.000
pno1 Danio rerio ENSDARG00000008502 N 0.000
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.000
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.000
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.000
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.000
PPA25260 Pristionchus pacificus PPA25260 N 0.000
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.000
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.000
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.000
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.000
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.000
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.000
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.000
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.000