BAB19129 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BAB19129 T59678_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM3
M048_0.6 		Homo sapiens RADACKA RNAcompete
Ray et al.(2013)
RNCMPT00050 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BAB19129 RRM 7 77

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAG09816 Xenopus laevis AAG09816 N 0.887
AAH41204 Xenopus laevis AAH41204 N 0.887
AAH54250 Xenopus laevis AAH54250 I 1.000
Ame_R005750 Ailuropoda melanoleuca Ame_R005750 I 0.718
Ame_R011907 Ailuropoda melanoleuca Ame_R011907 I 0.915
BAA31861 Xenopus laevis BAA31861 N 0.887
Cirbp Rattus norvegicus ENSRNOG00000015999 I 0.901
CIRBP Gorilla gorilla ENSGGOG00000002338 I 0.915
CIRBP Monodelphis domestica ENSMODG00000005290 I 0.901
CIRBP Microcebus murinus ENSMICG00000015962 I 0.887
CIRBP Pteropus vampyrus ENSPVAG00000005629 I 0.915
CIRBP Loxodonta africana ENSLAFG00000032156 I 0.915
CIRBP Ornithorhynchus anatinus ENSOANG00000012230 I 0.915
CIRBP Meleagris gallopavo ENSMGAG00000010253 I 0.915
CIRBP Anolis carolinensis ENSACAG00000000441 I 0.915
CIRBP Homo sapiens ENSG00000099622 I 0.915
CIRBP Felis catus ENSFCAG00000013724 I 0.901
CIRBP Canis familiaris ENSCAFG00000019506 I 0.915
CIRBP Sus scrofa ENSSSCG00000013427 I 0.915
CIRBP Cavia porcellus ENSCPOG00000019403 N 0.887
cirbp Danio rerio ENSDARG00000013351 N 0.761
cirbp Xenopus tropicalis ENSXETG00000003281 I 0.887
CIRBP Tursiops truncatus ENSTTRG00000011049 I 0.915
CIRBP Taeniopygia guttata ENSTGUG00000000884 I 0.915
Cirbp Mus musculus ENSMUSG00000045193 I 0.901
ENSCAFG00000023295 Canis familiaris ENSCAFG00000023295 I 0.704
ENSOCUG00000002271 Oryctolagus cuniculus ENSOCUG00000002271 I 0.732
ENSPPYG00000020314 Pongo pygmaeus ENSPPYG00000020314 I 0.704
LOC100051736 Equus caballus ENSECAG00000024257 I 0.718
LOC100394350 Callithrix jacchus ENSCJAG00000005504 I 0.915
LOC706175 Macaca mulatta ENSMMUG00000022101 I 0.915
O93235 Xenopus laevis O93235 N 0.887
Q3SZN4_BOVIN Bos taurus ENSBTAG00000007480 I 0.915
Q45KQ2_CHICK Gallus gallus ENSGALG00000012225 I 0.901
Q9DED4 Xenopus laevis Q9DED4 I 1.000
RBM3 Anolis carolinensis ENSACAG00000013718 I 0.732
RBM3 Cavia porcellus ENSCPOG00000003553 I 0.718
RBM3 Gorilla gorilla ENSGGOG00000005864 I 0.704
Rbm3 Dipodomys ordii ENSDORG00000000182 I 0.718
RBM3 Tursiops truncatus ENSTTRG00000008587 I 0.704
RBM3 Felis catus ENSFCAG00000002245 I 0.718
RBM3 Loxodonta africana ENSLAFG00000007003 I 0.718
Rbm3 Mus musculus ENSMUSG00000031167 I 0.718
RBM3 Pteropus vampyrus ENSPVAG00000015630 I 0.718
Rbm3 Rattus norvegicus ENSRNOG00000005387 I 0.718
RBM3 Homo sapiens ENSG00000102317 D 0.704
XM_549003.1 Canis familiaris ENSCAFG00000016002 I 0.718
XR_020876.1 Pan troglodytes ENSPTRG00000010192 I 0.887
XR_023694.1 Pan troglodytes ENSPTRG00000021864 I 0.704
zgc:112425 Danio rerio ENSDARG00000042049 N 0.746