cassava42994.valid.m1 (Manihot esculenta)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 cassava42994.valid.m1 T60988_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava42994.valid.m1 S1 92 166
cassava42994.valid.m1 S1 180 248
cassava42994.valid.m1 S1 257 329

Links

Other S1 family RBPs
Other Manihot esculenta RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003354 Ricinus communis 29889.m003354 N 0.959
A9PE95_POPTR Populus trichocarpa POPTR_0008s10050 N 0.922
B9HX66_POPTR Populus trichocarpa POPTR_0010s16010 N 0.926
BGIOSIBCE010878 Oryza indica BGIOSIBCE010878 N 0.793
BRADI1G64130 Brachypodium distachyon BRADI1G64130 N 0.774
Cucsa.252380 Cucumis sativus Cucsa.252380 N 0.899
Glyma09g03660.1 Glycine max Glyma09g03660.1 N 0.811
Glyma15g14550.1 Glycine max Glyma15g14550.1 N 0.797
Glyma17g04190.1 Glycine max Glyma17g04190.1 N 0.848
GSVIVG00034940001 Vitis vinifera GSVIVG00034940001 N 0.935
LOC_Os03g20100 Oryza sativa LOC_Os03g20100 N 0.793
MDP0000158987 Malus x domestica MDP0000158987 N 0.876
MDP0000926379 Malus x domestica MDP0000926379 N 0.903
Medtr2g037310 Medicago truncatula Medtr2g037310 N 0.780
mgf005405m Mimulus guttatus mgf005405m N 0.912
mgf010973m Mimulus guttatus mgf010973m N 0.912
PK19934.1 Cannabis sativa PK19934.1 N 0.885
ppa006438m Prunus persica ppa006438m N 0.912
RPS1 Arabidopsis thaliana AT5G30510-TAIR-G N 0.880
SB01G037100 Sorghum bicolor Sb01g037100 N 0.793
XM_002874427.1 Arabidopsis lyrata fgenesh2_kg.6__2815__AT5G30510.1 N 0.880