29889.m003354 (Ricinus communis)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 29889.m003354 T60948_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29889.m003354 S1 93 167
29889.m003354 S1 181 250
29889.m003354 S1 259 331

Links

Other S1 family RBPs
Other Ricinus communis RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42994.valid.m1 Manihot esculenta cassava42994.valid.m1 N 0.959
GSVIVG00034940001 Vitis vinifera GSVIVG00034940001 N 0.922
mgf010973m Mimulus guttatus mgf010973m N 0.917
mgf005405m Mimulus guttatus mgf005405m N 0.917
B9HX66_POPTR Populus trichocarpa POPTR_0010s16010 N 0.913
A9PE95_POPTR Populus trichocarpa POPTR_0008s10050 N 0.913
MDP0000926379 Malus x domestica MDP0000926379 N 0.908
ppa006438m Prunus persica ppa006438m N 0.908
Cucsa.252380 Cucumis sativus Cucsa.252380 N 0.890
PK19934.1 Cannabis sativa PK19934.1 N 0.881
XM_002874427.1 Arabidopsis lyrata fgenesh2_kg.6__2815__AT5G30510.1 N 0.876
MDP0000158987 Malus x domestica MDP0000158987 N 0.876
RPS1 Arabidopsis thaliana AT5G30510-TAIR-G N 0.876
Glyma17g04190.1 Glycine max Glyma17g04190.1 N 0.835
Glyma09g03660.1 Glycine max Glyma09g03660.1 N 0.803
Glyma15g14550.1 Glycine max Glyma15g14550.1 N 0.789
LOC_Os03g20100 Oryza sativa LOC_Os03g20100 N 0.784
BGIOSIBCE010878 Oryza indica BGIOSIBCE010878 N 0.784
SB01G037100 Sorghum bicolor Sb01g037100 N 0.784
Medtr2g037310 Medicago truncatula Medtr2g037310 N 0.772
BRADI1G64130 Brachypodium distachyon BRADI1G64130 N 0.761