A9PE95_POPTR (Populus trichocarpa)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 POPTR_0008s10050 T60743_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s10050.1 S1 93 167
POPTR_0008s10050.1 S1 181 249
POPTR_0008s10050.1 S1 258 330

Links

Other S1 family RBPs
Other Populus trichocarpa RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HX66_POPTR Populus trichocarpa POPTR_0010s16010 N 0.945
cassava42994.valid.m1 Manihot esculenta cassava42994.valid.m1 N 0.922
29889.m003354 Ricinus communis 29889.m003354 N 0.913
GSVIVG00034940001 Vitis vinifera GSVIVG00034940001 N 0.908
ppa006438m Prunus persica ppa006438m N 0.908
MDP0000926379 Malus x domestica MDP0000926379 N 0.894
mgf005405m Mimulus guttatus mgf005405m N 0.894
mgf010973m Mimulus guttatus mgf010973m N 0.894
Cucsa.252380 Cucumis sativus Cucsa.252380 N 0.885
PK19934.1 Cannabis sativa PK19934.1 N 0.876
RPS1 Arabidopsis thaliana AT5G30510-TAIR-G N 0.871
XM_002874427.1 Arabidopsis lyrata fgenesh2_kg.6__2815__AT5G30510.1 N 0.871
MDP0000158987 Malus x domestica MDP0000158987 N 0.862
Glyma17g04190.1 Glycine max Glyma17g04190.1 N 0.829
Glyma09g03660.1 Glycine max Glyma09g03660.1 N 0.811
Glyma15g14550.1 Glycine max Glyma15g14550.1 N 0.802
LOC_Os03g20100 Oryza sativa LOC_Os03g20100 N 0.770
SB01G037100 Sorghum bicolor Sb01g037100 N 0.770
BGIOSIBCE010878 Oryza indica BGIOSIBCE010878 N 0.770
Medtr2g037310 Medicago truncatula Medtr2g037310 N 0.757
BRADI1G64130 Brachypodium distachyon BRADI1G64130 N 0.751