CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE25369
(
Drosophila yakuba
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
FBgn0242446
T00704_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0270379
CCCH ZF
163
185
HICSFWVKGECKRGEECPYRHDK
FBpp0270379
RRM
234
299
LYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLVIQGRKVS
Links
Other
CCCH ZF,RRM
family RBPs
Other
Drosophila yakuba
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100406727
Callithrix jacchus
ENSCJAG00000016724
N
0.000
RAVER2
Canis familiaris
ENSCAFG00000018617
N
0.000
RAVER2
Equus caballus
ENSECAG00000022014
N
0.000
RAVER2
Gorilla gorilla
ENSGGOG00000016447
N
0.000
RAVER2
Loxodonta africana
ENSLAFG00000012508
N
0.000
RAVER2
Macaca mulatta
ENSMMUG00000018565
N
0.000
RAVER2
Monodelphis domestica
ENSMODG00000001242
N
0.000
RAVER2
Ornithorhynchus anatinus
ENSOANG00000008327
N
0.000
RAVER2
Otolemur garnettii
ENSOGAG00000011157
N
0.000
ENSPPYG00000001271
Pongo pygmaeus
ENSPPYG00000001271
N
0.000
RAVER2
Pteropus vampyrus
ENSPVAG00000007172
N
0.000
RAVER2
Tarsius syrichta
ENSTSYG00000006019
N
0.000
RAVER2
Tupaia belangeri
ENSTBEG00000009004
N
0.000