CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000001271
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000001271
T40433_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000001482
RRM
72
135
ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI
ENSPPYP00000001482
RRM
145
214
LCITNLPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGKQLGASAL
ENSPPYP00000001482
RRM
234
304
LCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSAAEHAEEVQQAADGMTIKGSKVQ
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER2
Pan troglodytes
ENSPTRG00000000824
N
0.985
RAVER2
Homo sapiens
ENSG00000162437
N
0.980
RAVER2
Macaca mulatta
ENSMMUG00000018565
N
0.980
LOC100406727
Callithrix jacchus
ENSCJAG00000016724
N
0.966
RAVER2
Bos taurus
ENSBTAG00000030686
N
0.941
RAVER2
Gorilla gorilla
ENSGGOG00000016447
N
0.893
Raver2
Mus musculus
ENSMUSG00000035275
N
0.883
Raver2
Rattus norvegicus
ENSRNOG00000023812
N
0.883
RAVER2
Oryctolagus cuniculus
ENSOCUG00000006221
N
0.879
RAVER2
Equus caballus
ENSECAG00000022014
N
0.868
RAVER2
Loxodonta africana
ENSLAFG00000012508
N
0.859
RAVER2
Canis familiaris
ENSCAFG00000018617
N
0.854
RAVER2
Tupaia belangeri
ENSTBEG00000009004
N
0.844
RAVER2
Pteropus vampyrus
ENSPVAG00000007172
N
0.834
RAVER2
Tarsius syrichta
ENSTSYG00000006019
N
0.834
Raver2
Dipodomys ordii
ENSDORG00000002498
N
0.806
Ame_R013192
Ailuropoda melanoleuca
Ame_R013192
N
0.795
RAVER2
Choloepus hoffmanni
ENSCHOG00000007668
N
0.790
RAVER2
Otolemur garnettii
ENSOGAG00000011157
N
0.782
RAVER2
Macropus eugenii
ENSMEUG00000012740
N
0.782
RAVER2
Monodelphis domestica
ENSMODG00000001242
N
0.766
RAVER2
Meleagris gallopavo
ENSMGAG00000011806
N
0.728
RAVER2
Gallus gallus
ENSGALG00000011026
N
0.728
RAVER2
Anolis carolinensis
ENSACAG00000008443
N
0.718
RAVER2
Ornithorhynchus anatinus
ENSOANG00000008327
N
0.717
RAVER2
Cavia porcellus
ENSCPOG00000005986
N
0.702