CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

ZFP36 *(Cavia porcellus)* CCCH ZF
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00642 (zf-CCCH)	IPR000571	ENSCPOG00000011363	T02400_0.6	Ensembl (2011-Oct-26)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
ZFP36 M268_0.6	Homo sapiens	Sequence logo not available	AUUUA	RIP-chip Cook et al.(2011) 194_18256032.1	1.000
ZFP36 M267_0.6	Homo sapiens	Sequence logo not available	UUAUUUAUU	RIP-chip Cook et al.(2011) 194_18256032	1.000
ZFP36 M266_0.6	Homo sapiens	Sequence logo not available	UUGUGS	RIP-chip Cook et al.(2011) 193_18367721.3	1.000
ZFP36 M265_0.6	Homo sapiens	Sequence logo not available	CUUGU	RIP-chip Cook et al.(2011) 193_18367721.2	1.000
ZFP36 M264_0.6	Homo sapiens	Sequence logo not available	HCYUBY	RIP-chip Cook et al.(2011) 193_18367721.1	1.000
ZFP36 M263_0.6	Homo sapiens	Sequence logo not available	AAUAA	RIP-chip Cook et al.(2011) 193_18367721	1.000
ZFP36 M350_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 951_12324455	1.000
ZFP36 M269_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 221_12324455	1.000
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCPOP00000015438	CCCH ZF	96	122	YKTELCRTFSESGRCRYGAKCQFAHGL
ENSCPOP00000015438	CCCH ZF	134	160	YKTELCHKFYLQGRCPYGSRCHFIHNP

Links
Other CCCH ZF family RBPs
Other *Cavia porcellus* RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
DGIL_AUG5s1025g3t1	Acyrtosiphon pisum	DGIL_AUG5s1025g3t1	N	0.000
DGIL_AUG5s14548g2t1	Acyrtosiphon pisum	DGIL_AUG5s14548g2t1	N	0.000
AGAP005127	Anopheles gambiae	AGAP005127	N	0.000
amel4_ncbi_hmm812	Apis mellifera	amel4_ncbi_hmm812	N	0.000
BGIBMGA004109	Bombyx mori	BGIBMGA004109	N	0.000
CpipJ_CPIJ002280	Culex pipiens	CpipJ_CPIJ002280	N	0.000
CPIJ002280	Culex quinquefasciatus	CPIJ002280	N	0.000
GF13651	Drosophila ananassae	FBgn0090679	N	0.000
GG23320	Drosophila erecta	FBgn0115471	N	0.000
GH20604	Drosophila grimshawi	FBgn0128067	N	0.000
nito	Drosophila melanogaster	FBgn0027548	N	0.000
GI20446	Drosophila mojavensis	FBgn0143182	N	0.000
GL11478	Drosophila persimilis	FBgn0149087	N	0.000
GA15511-RA	Drosophila pseudoobscura	FBgn0075528	N	0.000
GM20997	Drosophila sechellia	FBgn0175878	N	0.000
GD10528	Drosophila simulans	FBgn0182299	N	0.000
GJ20116	Drosophila virilis	FBgn0207256	N	0.000
GK10751	Drosophila willistoni	FBgn0212763	N	0.000
GE19164	Drosophila yakuba	FBgn0236524	N	0.000
nasonia_NCBI_hmm1324624	Nasonia vitripennis	nasonia_NCBI_hmm1324624	N	0.000
PHUM308070	Pediculus humanus	PHUM308070	N	0.000