gw1.42.93.1 (Daphnia pulex)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.42.93.1 T05545_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.42.93.1 CCCH ZF 4 30
gw1.42.93.1 CCCH ZF 42 68

Links

Other CCCH ZF family RBPs
Other Daphnia pulex RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL002308 Aedes aegypti AAEL002308 I 0.889
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.926
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.926
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.722
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.759
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.907
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.926
AGAP010954 Anopheles gambiae AGAP010954 N 0.907
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.907
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.889
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.926
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.926
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.907
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.926
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.926
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.926
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.926
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.852
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.944
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.926
ZFP36L2 Choloepus hoffmanni ENSCHOG00000005595 N 0.741
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.870
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.870
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.889
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.889
zfp36l1b Danio rerio ENSDARG00000021443 I 0.907
zfp36l1a Danio rerio ENSDARG00000016154 I 0.926
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.852
zgc:114130 Danio rerio ENSDARG00000040725 I 0.815
zfp36l2 Danio rerio ENSDARG00000021806 I 0.889
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.926
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.926
GF21384 Drosophila ananassae FBgn0098386 N 0.870
GG17735 Drosophila erecta FBgn0109957 N 0.852
GH17894 Drosophila grimshawi FBgn0125362 N 0.870
Tis11 Drosophila melanogaster FBgn0011837 N 0.852
GI21684 Drosophila mojavensis FBgn0144414 N 0.870
GL13141 Drosophila persimilis FBgn0150747 N 0.870
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.870
GM11580 Drosophila sechellia FBgn0166523 N 0.852
GJ15863 Drosophila virilis FBgn0203050 N 0.870
GK25600 Drosophila willistoni FBgn0227559 N 0.870
GE17025 Drosophila yakuba FBgn0234511 N 0.852
LOC100063597 Equus caballus ENSECAG00000018860 I 0.926
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.852
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.852
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.926
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.704
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.815
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.926
153596 Helobdella robusta 153596 N 0.722
64152 Helobdella robusta 64152 N 0.833
138584 Helobdella robusta 138584 N 0.704
ZFP36L2 Homo sapiens ENSG00000152518 I 0.926
ZFP36L1 Homo sapiens ENSG00000185650 I 0.926
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.907
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.704
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.870
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.926
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.926
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.926
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.926
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.926
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.926
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.759
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.796
Zfp36 Mus musculus ENSMUSG00000044786 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.926
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.926
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.926
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.889
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.926
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.926
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.926
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.722
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.852
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.926
0300010273 Ostreococcus tauri 0300010273 I 0.704
ZFP36L1 Otolemur garnettii ENSOGAG00000010033 N 0.764
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.926
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.926
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.926
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.926
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.704
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.926
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.907
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.926
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.926
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.926
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.704
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.815
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.741
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.704
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.926
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.926
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.926
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.926
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.926
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.926
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.926
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.926
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.926
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.815
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.926
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.889
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.907
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.926
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.722
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.889
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.907
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.889
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.889
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.926
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.926
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.926
Q805B4 Xenopus laevis Q805B4 I 0.926
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.907
BAC54909 Xenopus laevis BAC54909 I 0.926
AAI00163 Xenopus laevis AAI00163 I 0.926
AAH84221 Xenopus laevis AAH84221 I 0.926
AAH84197 Xenopus laevis AAH84197 I 0.926
AAH44086 Xenopus laevis AAH44086 I 0.907
AAD24209 Xenopus laevis AAD24209 I 0.926
AAD24208 Xenopus laevis AAD24208 I 0.926
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.926
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.907