CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os01g38049
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os01g38049
T10810_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g38049.1
CCHC ZF
309
326
QVCFNCYKPGHFARECPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Aqu1.225190
Amphimedon queenslandica
Aqu1.225190
I
0.000
PABPN1
Anolis carolinensis
ENSACAG00000006185
I
0.000
BGIBMGA001950
Bombyx mori
BGIBMGA001950
I
0.000
fgenesh2_pm.scaffold_317000002
Branchiostoma floridae
fgenesh2_pm.scaffold_317000002
I
0.000
Bm1_48895
Brugia malayi
Bm1_48895
I
0.000
ENSCING00000012468
Ciona intestinalis
ENSCING00000012468
I
0.000
pabpn1
Danio rerio
ENSDARG00000045373
I
0.000
estExt_Genewise1.C_30355
Daphnia pulex
estExt_Genewise1.C_30355
I
0.000
PABPN1
Gasterosteus aculeatus
ENSGACG00000002167
I
0.000
LOAG_03634
Loa loa
LOAG_03634
I
0.000
gw1.9.516.1
Lottia gigantea
gw1.9.516.1
I
0.000
PABPN1
Oryzias latipes
ENSORLG00000006136
I
0.000
PHUM037550
Pediculus humanus
PHUM037550
I
0.000
PABPN1
Takifugu rubripes
ENSTRUG00000006554
I
0.000
PABPN1
Tetraodon nigroviridis
ENSTNIG00000005369
I
0.000
e_gw1.14.113.1
Trichoplax adhaerens
e_gw1.14.113.1
I
0.000
WUBG_04965
Wuchereria bancrofti
WUBG_04965
I
0.000
AAG36902
Xenopus laevis
AAG36902
I
0.000
AAH45063
Xenopus laevis
AAH45063
I
0.000
AAH73657
Xenopus laevis
AAH73657
I
0.000
AAR26262
Xenopus laevis
AAR26262
I
0.000
Q7ZXB8
Xenopus laevis
Q7ZXB8
I
0.000
Q9DDY9
Xenopus laevis
Q9DDY9
I
0.000
pabpn1
Xenopus tropicalis
ENSXETG00000014597
I
0.000