LOC_Os01g38049 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os01g38049 T10810_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g38049.1 CCHC ZF 309 326

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.000
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.000
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.000
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.000
Bm1_48895 Brugia malayi Bm1_48895 I 0.000
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.000
pabpn1 Danio rerio ENSDARG00000045373 I 0.000
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.000
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.000
LOAG_03634 Loa loa LOAG_03634 I 0.000
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.000
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.000
PHUM037550 Pediculus humanus PHUM037550 I 0.000
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.000
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.000
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.000
AAG36902 Xenopus laevis AAG36902 I 0.000
AAH45063 Xenopus laevis AAH45063 I 0.000
AAH73657 Xenopus laevis AAH73657 I 0.000
AAR26262 Xenopus laevis AAR26262 I 0.000
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.000
Q9DDY9 Xenopus laevis Q9DDY9 I 0.000
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.000