fgenesh2_pm.scaffold_317000002 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pm.scaffold_317000002 T52295_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.857
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.scaffold_317000002 RRM 50 119

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.929
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.901
pabpn1 Danio rerio ENSDARG00000045373 I 0.900
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.886
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.886
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.886
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.886
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.859
LOAG_03634 Loa loa LOAG_03634 I 0.857
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.857
Bm1_48895 Brugia malayi Bm1_48895 I 0.857
Q9DDY9 Xenopus laevis Q9DDY9 I 0.845
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.845
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.845
AAR26262 Xenopus laevis AAR26262 I 0.845
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.845
AAG36902 Xenopus laevis AAG36902 I 0.845
AAH73657 Xenopus laevis AAH73657 I 0.845
AAH45063 Xenopus laevis AAH45063 I 0.845
PABPN1 Homo sapiens ENSG00000100836 D 0.831
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.831
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.831
LOC100055599 Equus caballus ENSECAG00000011652 I 0.831
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.831
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.831
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.831
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.831
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.831
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.831
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.831
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.831
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.831
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.831
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.831
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.831
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.831
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.831
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.831
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.831
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.831
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.831
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.831
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.831
PHUM037550 Pediculus humanus PHUM037550 I 0.817
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.817
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.817
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.814
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.803
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.803
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.800
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.789
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.789
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.786
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.775
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.775
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.771
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.771
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.761
GM21011 Drosophila sechellia FBgn0175892 I 0.761
GF13666 Drosophila ananassae FBgn0090694 I 0.761
Pabp2 Drosophila yakuba FBgn0068105 I 0.761
Pabp2 Drosophila melanogaster FBgn0005648 I 0.761
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.761
GG23338 Drosophila erecta FBgn0115489 I 0.761
Smp_007630 Schistosoma mansoni Smp_007630 I 0.761
GH21908 Drosophila grimshawi FBgn0129369 I 0.761
GI19259 Drosophila mojavensis FBgn0141998 I 0.761
GJ22134 Drosophila virilis FBgn0209248 I 0.761
GK23192 Drosophila willistoni FBgn0225154 I 0.761
GD10545 Drosophila simulans FBgn0182316 I 0.761
156918 Helobdella robusta 156918 I 0.761
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.761
AGAP005117 Anopheles gambiae AGAP005117 I 0.761
AAEL015143 Aedes aegypti AAEL015143 I 0.761
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.761
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.757
CRE07990 Caenorhabditis remanei CRE07990 I 0.746
CBN10290 Caenorhabditis brenneri CBN10290 I 0.746
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.746
CJA15148 Caenorhabditis japonica CJA15148 I 0.746
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.746
PGTG_01300 Puccinia graminis PGTG_01300 N 0.746
PTTG_05043 Puccinia triticina PTTG_05043 N 0.746
GL17107 Drosophila persimilis FBgn0154711 I 0.746
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.746
CBN00953 Caenorhabditis brenneri CBN00953 I 0.746
CBG03741 Caenorhabditis briggsae CBG03741 I 0.746
estExt_fgenesh2_pm.C_40328 Serpula lacrymans estExt_fgenesh2_pm.C_40328 N 0.743
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.732
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.732
CBN16301 Caenorhabditis brenneri CBN16301 I 0.732
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.732
PABPN1L Homo sapiens ENSG00000205022 I 0.732
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.718
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.718
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.718
PABPN1 Gallus gallus ENSGALG00000006242 I 0.718
gw1.7.208.1 Melampsora laricis populina gw1.7.208.1 N 0.718
e_gw1.4.778.1 Heterobasidion annosum e_gw1.4.778.1 N 0.714
LOC100051357 Equus caballus ENSECAG00000000378 I 0.714
PPA11675 Pristionchus pacificus PPA11675 I 0.714
gww1.2.642.1 Laccaria bicolor gww1.2.642.1 N 0.704
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.704
pabp-2 Caenorhabditis elegans C17E4.5 I 0.704
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.704
EDP44971.1 Malassezia globosa EDP44971.1 N 0.704
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.704
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.704
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.704
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.704
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.704
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.700
e_gwh2.2.847.1 Phanerochaete chrysosporium e_gwh2.2.847.1 I 0.700
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.700