BGIBMGA001950 (Bombyx mori)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIBMGA001950 T54957_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.829
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA001950 RRM 78 147

Links

Other RRM family RBPs
Other Bombyx mori RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM037550 Pediculus humanus PHUM037550 I 0.957
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.943
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.900
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.900
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.857
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.845
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.845
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.845
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.845
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.843
Pabp2 Drosophila melanogaster FBgn0005648 I 0.843
AAEL015143 Aedes aegypti AAEL015143 I 0.843
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.843
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.843
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.843
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.843
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.843
AGAP005117 Anopheles gambiae AGAP005117 I 0.843
GJ22134 Drosophila virilis FBgn0209248 I 0.843
GI19259 Drosophila mojavensis FBgn0141998 I 0.843
GD10545 Drosophila simulans FBgn0182316 I 0.843
Pabp2 Drosophila yakuba FBgn0068105 I 0.843
GK23192 Drosophila willistoni FBgn0225154 I 0.843
GM21011 Drosophila sechellia FBgn0175892 I 0.843
GH21908 Drosophila grimshawi FBgn0129369 I 0.843
GG23338 Drosophila erecta FBgn0115489 I 0.843
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.843
GF13666 Drosophila ananassae FBgn0090694 I 0.843
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.831
pabpn1 Danio rerio ENSDARG00000045373 I 0.831
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.831
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.829
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.829
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.829
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.829
GL17107 Drosophila persimilis FBgn0154711 I 0.829
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.829
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.829
PABPN1 Homo sapiens ENSG00000100836 D 0.829
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.829
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.829
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.829
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.829
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.829
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.829
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.829
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.829
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.829
AAG36902 Xenopus laevis AAG36902 I 0.829
AAH45063 Xenopus laevis AAH45063 I 0.829
Q9DDY9 Xenopus laevis Q9DDY9 I 0.829
AAR26262 Xenopus laevis AAR26262 I 0.829
AAH73657 Xenopus laevis AAH73657 I 0.829
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.829
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.829
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.829
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.829
LOC100055599 Equus caballus ENSECAG00000011652 I 0.829
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.814
LOAG_03634 Loa loa LOAG_03634 I 0.789
Bm1_48895 Brugia malayi Bm1_48895 I 0.789
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.789
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.789
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.786
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.786
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.786
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.786
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.786
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.775
CBG03741 Caenorhabditis briggsae CBG03741 I 0.771
CBN00953 Caenorhabditis brenneri CBN00953 I 0.771
CJA15148 Caenorhabditis japonica CJA15148 I 0.771
CBN10290 Caenorhabditis brenneri CBN10290 I 0.771
CRE07990 Caenorhabditis remanei CRE07990 I 0.771
CBN16301 Caenorhabditis brenneri CBN16301 I 0.757
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.746
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.743
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.729
Smp_007630 Schistosoma mansoni Smp_007630 I 0.729
pabp-2 Caenorhabditis elegans C17E4.5 I 0.729
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.718
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.718
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.714
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.714
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.714
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.714
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.714
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.714
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.714
PABPN1 Gallus gallus ENSGALG00000006242 I 0.714
2JWN_A Xenopus laevis 2JWN_A I 0.700
PABPN1L Homo sapiens ENSG00000205022 I 0.700
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.700
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.700
156918 Helobdella robusta 156918 I 0.700
AAI70311 Xenopus laevis AAI70311 I 0.700
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.700
AAR26263 Xenopus laevis AAR26263 I 0.700
AAI70309 Xenopus laevis AAI70309 I 0.700
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.700
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.700
2JWN_B Xenopus laevis 2JWN_B I 0.700
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.700
Q6TY21 Xenopus laevis Q6TY21 I 0.700