ENSCING00000012468 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000012468 T35433_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.757
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000023253 RRM 103 172

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.929
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.786
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.786
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.786
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.786
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.786
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.786
pabpn1 Danio rerio ENSDARG00000045373 I 0.771
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.761
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.746
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.746
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.743
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.732
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.732
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.732
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.732
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.732
PHUM037550 Pediculus humanus PHUM037550 I 0.732
PABPN1 Homo sapiens ENSG00000100836 D 0.732
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.732
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.732
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.732
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.732
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.732
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.732
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.732
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.732
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.732
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.732
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.732
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.732
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.732
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.732
LOC100055599 Equus caballus ENSECAG00000011652 I 0.732
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.732
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.732
LOAG_03634 Loa loa LOAG_03634 I 0.729
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.729
Bm1_48895 Brugia malayi Bm1_48895 I 0.729
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.729
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.718
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.718
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.718
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.718
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.718
Q9DDY9 Xenopus laevis Q9DDY9 I 0.718
AAR26262 Xenopus laevis AAR26262 I 0.718
AAH45063 Xenopus laevis AAH45063 I 0.718
AAG36902 Xenopus laevis AAG36902 I 0.718
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.718
AAH73657 Xenopus laevis AAH73657 I 0.718
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.704
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.704
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.704
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.704
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.704