CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os02g46580
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g46580
T10970_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g46580.1
CCHC ZF
295
312
GSCFNCGELGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
659 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G06027
Brachypodium distachyon
BRADI3G06027
N
0.000
BRADI5G01317
Brachypodium distachyon
BRADI5G01317
N
0.000
LjSGA_073042.1
Lotus japonicus
LjSGA_073042.1
N
0.000
chr6.CM0885.320.nc
Lotus japonicus
chr6.CM0885.320.nc
N
0.000
chr6.CM0885.260.nc
Lotus japonicus
chr6.CM0885.260.nc
N
0.000
cassava14932.m1
Manihot esculenta
cassava14932.m1
N
0.000
cassava13324.valid.m1
Manihot esculenta
cassava13324.valid.m1
N
0.000
cassava13323.valid.m1
Manihot esculenta
cassava13323.valid.m1
N
0.000
cassava13322.valid.m1
Manihot esculenta
cassava13322.valid.m1
N
0.000
Medtr2g005610
Medicago truncatula
Medtr2g005610
N
0.000
BGIOSIBCE017245
Oryza indica
BGIOSIBCE017245
N
0.000
BGIOSIBCE013986
Oryza indica
BGIOSIBCE013986
N
0.000
LOC_Os05g01520
Oryza sativa
LOC_Os05g01520
N
0.000
LOC_Os04g04000
Oryza sativa
LOC_Os04g04000
N
0.000
B9N0D5_POPTR
Populus trichocarpa
POPTR_0004s23250
N
0.000
29765.m000746
Ricinus communis
29765.m000746
N
0.000
SB09G000580
Sorghum bicolor
Sb09g000580
N
0.000
GRMZM2G303312
Zea mays
GRMZM2G303312
N
0.000