B9N3Z3_POPTR (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0005s00240 T12710_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s00240.1 CCHC ZF 754 771

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.722
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.722
PK16552.1 Cannabis sativa PK16552.1 N 0.889
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.889
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.833
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.833
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.833
mgf008200m Mimulus guttatus mgf008200m N 0.889
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.833
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.833
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 1.000
ppa001778m Prunus persica ppa001778m N 0.944
PTTG_11057 Puccinia triticina PTTG_11057 N 0.000
PTTG_10751 Puccinia triticina PTTG_10751 N 0.000
30128.m009003 Ricinus communis 30128.m009003 N 0.944
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.833
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.944
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.833