CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000006596
(
Rattus norvegicus
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSRNOG00000006596
T16995_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.972
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.972
ybx2-a
M250_0.6
Xenopus laevis
UAACAUC
SELEX
Cook et al.(2011)
114_7499328
0.903
ybx2-a
M260_0.6
Xenopus laevis
GCCANACCAYCGC
SELEX
Cook et al.(2011)
130_11376140
0.903
ybx2-a
M254_0.6
Xenopus laevis
KAACAUCU
SELEX
Cook et al.(2011)
115_7499328
0.903
YBX2
M082_0.6
Homo sapiens
AACAWCD
RNAcompete
Ray et al.(2013)
RNCMPT00084
0.889
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000056502
CSD
47
116
KVLGTVKFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPSKYLRSVGDGETVEFDVVEGEKGAEAANVTGP
Links
Other
CSD
family RBPs
Other
Rattus norvegicus
RBPs
208 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R010643
Ailuropoda melanoleuca
Ame_R010643
N
0.000
LARP4
Anolis carolinensis
ENSACAG00000017133
N
0.000
A7MB26_BOVIN
Bos taurus
ENSBTAG00000017164
N
0.000
LARP4
Callithrix jacchus
ENSCJAG00000021131
N
0.000
LARP4
Canis familiaris
ENSCAFG00000008174
N
0.000
ENSCPOG00000020519
Cavia porcellus
ENSCPOG00000020519
N
0.000
LARP4
Choloepus hoffmanni
ENSCHOG00000010490
N
0.000
larp4a
Danio rerio
ENSDARG00000078401
N
0.000
LARP4
Danio rerio
ENSDARG00000074979
N
0.000
LARP4
Dasypus novemcinctus
ENSDNOG00000018540
N
0.000
LARP4
Equus caballus
ENSECAG00000012479
N
0.000
Q5F449_CHICK
Gallus gallus
ENSGALG00000006163
N
0.000
LARP4
Gasterosteus aculeatus
ENSGACG00000008381
N
0.000
LARP4
Gasterosteus aculeatus
ENSGACG00000000680
N
0.000
LARP4
Gorilla gorilla
ENSGGOG00000015230
N
0.000
LARP4
Homo sapiens
ENSG00000161813
N
0.000
LARP4
Loxodonta africana
ENSLAFG00000005160
N
0.000
LOC693337
Macaca mulatta
ENSMMUG00000008172
N
0.000
LARP4
Meleagris gallopavo
ENSMGAG00000010598
N
0.000
LARP4
Monodelphis domestica
ENSMODG00000004844
N
0.000
Larp4
Mus musculus
ENSMUSG00000023025
N
0.000
LARP4
Myotis lucifugus
ENSMLUG00000012513
N
0.000
LARP4
Ochotona princeps
ENSOPRG00000004592
N
0.000
LARP4
Ornithorhynchus anatinus
ENSOANG00000004373
N
0.000
ENSOCUG00000026872
Oryctolagus cuniculus
ENSOCUG00000026872
N
0.000
ENSOCUG00000021417
Oryctolagus cuniculus
ENSOCUG00000021417
N
0.000
LARP4
Oryzias latipes
ENSORLG00000006758
N
0.000
LARP4
Oryzias latipes
ENSORLG00000018835
N
0.000
XR_019868.1
Pan troglodytes
ENSPTRG00000004935
N
0.000
ENSPPYG00000004512
Pongo pygmaeus
ENSPPYG00000004512
N
0.000
ENSPPYG00000006330
Pongo pygmaeus
ENSPPYG00000006330
N
0.000
LARP4
Procavia capensis
ENSPCAG00000003671
N
0.000
LARP4
Pteropus vampyrus
ENSPVAG00000016840
N
0.000
LOC683071
Rattus norvegicus
ENSRNOG00000042017
N
0.000
LARP4
Sorex araneus
ENSSARG00000012469
N
0.000
LARP4
Sus scrofa
ENSSSCG00000000219
N
0.000
LARP4
Taeniopygia guttata
ENSTGUG00000003479
N
0.000
LARP4
Takifugu rubripes
ENSTRUG00000007206
N
0.000
LARP4
Takifugu rubripes
ENSTRUG00000015939
N
0.000
LARP4
Tarsius syrichta
ENSTSYG00000004342
N
0.000
LARP4
Tetraodon nigroviridis
ENSTNIG00000014571
N
0.000
LARP4
Tupaia belangeri
ENSTBEG00000005167
N
0.000
LARP4
Tursiops truncatus
ENSTTRG00000003764
N
0.000
LARP4
Vicugna pacos
ENSVPAG00000010136
N
0.000
AAI24888
Xenopus laevis
AAI24888
N
0.000
AAI30197
Xenopus laevis
AAI30197
N
0.000
larp4
Xenopus tropicalis
ENSXETG00000007283
N
0.000