ENSRNOG00000006596 (Rattus norvegicus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSRNOG00000006596 T16995_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.972
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.972
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.903
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.903
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.903
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.889
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000056502 CSD 47 116

Links

Other CSD family RBPs
Other Rattus norvegicus RBPs

208 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.806
AAEL001375 Aedes aegypti AAEL001375 I 0.750
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.764
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.718
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.704
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.722
AGAP006108 Anopheles gambiae AGAP006108 I 0.750
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.806
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.806
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.778
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.972
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.972
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.930
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.944
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.901
Bm1_57515 Brugia malayi Bm1_57515 I 0.750
CBN16711 Caenorhabditis brenneri CBN16711 I 0.736
CBG02981 Caenorhabditis briggsae CBG02981 I 0.722
cey-1 Caenorhabditis elegans F33A8.3 I 0.736
CJA05984 Caenorhabditis japonica CJA05984 I 0.708
CRE01789 Caenorhabditis remanei CRE01789 I 0.736
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.778
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.861
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.972
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.833
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.843
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.915
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.861
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.764
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.944
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.833
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.972
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.778
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.901
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.930
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.972
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.915
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.824
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.958
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.972
YBX2 Canis familiaris ENSCAFG00000016128 I 0.930
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.778
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.778
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.819
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.718
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.764
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.764
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.792
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.736
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.708
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.847
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.764
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.764
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.764
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.930
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.972
CSDA Cavia porcellus ENSCPOG00000011329 I 0.972
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.972
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.781
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.795
ybx1 Danio rerio ENSDARG00000004757 I 0.972
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.778
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.753
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.712
Csda Dipodomys ordii ENSDORG00000009103 I 0.972
GF10852 Drosophila ananassae FBgn0087892 I 0.792
GH16919 Drosophila grimshawi FBgn0124390 I 0.792
yps Drosophila melanogaster FBgn0022959 I 0.778
GI13673 Drosophila mojavensis FBgn0136428 I 0.792
GL15684 Drosophila persimilis FBgn0153288 I 0.792
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.792
GM24682 Drosophila sechellia FBgn0179545 I 0.778
GD12750 Drosophila simulans FBgn0184477 I 0.778
GJ14010 Drosophila virilis FBgn0201228 I 0.792
GK16710 Drosophila willistoni FBgn0218712 I 0.792
GE20150 Drosophila yakuba FBgn0237472 I 0.778
CSDA Echinops telfairi ENSETEG00000002557 I 0.972
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.704
YBX1 Echinops telfairi ENSETEG00000014789 I 0.722
YBX2 Echinops telfairi ENSETEG00000014271 I 0.712
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.958
LOC100065107 Equus caballus ENSECAG00000013777 I 0.972
LOC100067336 Equus caballus ENSECAG00000023592 I 0.972
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.972
LOC100072964 Equus caballus ENSECAG00000009996 I 0.930
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.972
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.915
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.972
CSDA Felis catus ENSFCAG00000018959 I 0.704
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.972
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.972
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.822
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.972
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.972
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.944
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.915
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.750
146547 Helobdella robusta 146547 I 0.708
133388 Helobdella robusta 133388 I 0.736
YBX2 Homo sapiens ENSG00000006047 D 0.915
CSDA Homo sapiens ENSG00000060138 I 0.972
YB-1 Homo sapiens ENSG00000065978 D 0.972
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.847
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.847
ISCW005281 Ixodes scapularis ISCW005281 I 0.792
LOAG_11791 Loa loa LOAG_11791 I 0.704
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.847
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.930
CSDA Loxodonta africana ENSLAFG00000017247 I 0.972
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.972
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.958
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.972
CSDA Macaca mulatta ENSMMUG00000022469 I 0.972
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.930
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.736
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.972
CSDA Microcebus murinus ENSMICG00000004602 I 0.831
YBX1 Microcebus murinus ENSMICG00000014984 I 0.972
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.972
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.915
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.915
CSDA Monodelphis domestica ENSMODG00000018248 I 0.958
Ybx2 Mus musculus ENSMUSG00000018554 I 0.930
Csda Mus musculus ENSMUSG00000030189 I 0.972
Ybx1 Mus musculus ENSMUSG00000028639 I 0.972
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.819
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.861
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.944
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.972
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.778
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.930
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.792
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.792
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.972
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.972
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.736
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.729
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.712
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.822
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.972
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.792
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.915
CSDA Pan troglodytes ENSPTRG00000004681 I 0.972
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.972
PHUM156710 Pediculus humanus PHUM156710 I 0.806
PHUM156720 Pediculus humanus PHUM156720 I 0.792
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.803
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.972
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.764
YBX1 Procavia capensis ENSPCAG00000008397 I 0.704
YBX2 Procavia capensis ENSPCAG00000008019 I 0.930
CSDA Procavia capensis ENSPCAG00000001397 I 0.901
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.972
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.972
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.930
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.972
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.915
Csda Rattus norvegicus ENSRNOG00000005480 I 0.972
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.833
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.958
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.764
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.750
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.704
YBX2 Sorex araneus ENSSARG00000000488 I 0.915
YBX1 Sorex araneus ENSSARG00000012628 I 0.764
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.972
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.792
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.792
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.833
CSDA Sus scrofa ENSSSCG00000000633 I 0.972
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.915
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.778
YBX2 Sus scrofa ENSSSCG00000017938 I 0.930
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.972
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.972
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.808
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.972
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.778
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.808
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.972
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.806
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.750
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.972
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.930
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.845
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.714
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.712
CSDA Vicugna pacos ENSVPAG00000000876 I 0.831
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.972
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.750
P45441 Xenopus laevis P45441 I 0.915
AAI55915 Xenopus laevis AAI55915 I 0.930
AAI69704 Xenopus laevis AAI69704 I 0.930
ybx2-a Xenopus laevis AAI69706 D 0.930
CAA42778 Xenopus laevis CAA42778 I 0.972
P21573 Xenopus laevis P21573 I 0.972
P21574 Xenopus laevis P21574 I 0.930
AAI55914 Xenopus laevis AAI55914 I 0.915
AAI30161 Xenopus laevis AAI30161 I 0.972
AAI06324 Xenopus laevis AAI06324 I 0.972
AAH42217 Xenopus laevis AAH42217 I 0.972
AAH41191 Xenopus laevis AAH41191 I 0.972
AAA49924 Xenopus laevis AAA49924 I 0.915
AAA49716 Xenopus laevis AAA49716 I 0.930
AAA49715 Xenopus laevis AAA49715 I 0.972
Q00436 Xenopus laevis Q00436 I 0.972
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.972
csda Xenopus tropicalis ENSXETG00000016239 I 0.930