FMR1 (Sus scrofa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSSSCG00000012727 T19505_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FMR1
M305_0.6 		Homo sapiens Sequence logo not available KAGCGRCUGG SELEX
Cook et al.(2011)
471_15805463.1 		0.764
FMR1
M304_0.6 		Homo sapiens Sequence logo not available GGGCKAAGGARK SELEX
Cook et al.(2011)
471_15805463 		0.764
FMR1
M016_0.6 		Homo sapiens KGACARG RNAcompete
Ray et al.(2013)
RNCMPT00016 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000013531 KH 220 279
ENSSSCP00000013531 KH 283 360

Links

Other KH family RBPs
Other Sus scrofa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R006793 Ailuropoda melanoleuca Ame_R006793 I 0.986
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.775
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.826
LOC100414871 Callithrix jacchus ENSCJAG00000003925 I 0.826
FMR1 Canis familiaris ENSCAFG00000019085 I 0.804
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.855
FMR1 Dasypus novemcinctus ENSDNOG00000019486 I 0.906
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.797
FMR1 Echinops telfairi ENSETEG00000006061 I 0.884
FMR1 Felis catus ENSFCAG00000007228 I 0.986
FMR1 Gorilla gorilla ENSGGOG00000010373 N 0.826
FMR1 Homo sapiens ENSG00000102081 D 0.826
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.833
FMR1 Macaca mulatta ENSMMUG00000015814 I 0.826
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.754
Fmr1 Mus musculus ENSMUSG00000000838 I 0.826
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.797
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.783
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.819
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.725
FMR1 Pan troglodytes ENSPTRG00000022349 I 0.826
ENSPPYG00000020797 Pongo pygmaeus ENSPPYG00000020797 I 0.899
FMR1 Procavia capensis ENSPCAG00000011936 N 0.833
FMR1 Pteropus vampyrus ENSPVAG00000013386 I 0.971
FMR1_RAT Rattus norvegicus ENSRNOG00000011900 I 0.833
FMR1 Sorex araneus ENSSARG00000003475 N 0.775
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.833
FMR1 Tursiops truncatus ENSTTRG00000000613 I 0.891
FMR1 Vicugna pacos ENSVPAG00000008700 I 0.993