LOC100414871 (Callithrix jacchus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCJAG00000003925 T18528_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FMR1
M305_0.6 		Homo sapiens Sequence logo not available KAGCGRCUGG SELEX
Cook et al.(2011)
471_15805463.1 		0.989
FMR1
M304_0.6 		Homo sapiens Sequence logo not available GGGCKAAGGARK SELEX
Cook et al.(2011)
471_15805463 		0.989
FMR1
M016_0.6 		Homo sapiens KGACARG RNAcompete
Ray et al.(2013)
RNCMPT00016 		0.989
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000007304 KH 220 279
ENSCJAP00000007333 KH 220 279
ENSCJAP00000007333 KH 283 396
ENSCJAP00000007345 KH 220 279
ENSCJAP00000007345 KH 283 337
ENSCJAP00000007346 KH 220 279
ENSCJAP00000007346 KH 283 335

Links

Other KH family RBPs
Other Callithrix jacchus RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FMR1 Erinaceus europaeus ENSEEUG00000015366 N 1.000
FMR1 Pan troglodytes ENSPTRG00000022349 I 1.000
FMR1 Myotis lucifugus ENSMLUG00000000587 N 1.000
FMR1 Tarsius syrichta ENSTSYG00000014392 N 1.000
FMR1 Homo sapiens ENSG00000102081 D 1.000
FMR1 Choloepus hoffmanni ENSCHOG00000006340 N 1.000
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.991
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.991
FMR1 Macaca mulatta ENSMMUG00000015814 I 0.989
ENSPPYG00000020797 Pongo pygmaeus ENSPPYG00000020797 I 0.983
FMR1 Gorilla gorilla ENSGGOG00000010373 N 0.983
FMR1 Procavia capensis ENSPCAG00000011936 N 0.974
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.974
Fmr1 Mus musculus ENSMUSG00000000838 I 0.974
FMR1 Canis familiaris ENSCAFG00000019085 I 0.973
FMR1 Macropus eugenii ENSMEUG00000014280 N 0.967
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.966
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.966
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.965
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.965
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.948
FMR1 Sorex araneus ENSSARG00000003475 N 0.947
FMR1_RAT Rattus norvegicus ENSRNOG00000011900 I 0.943
FMR1 Tursiops truncatus ENSTTRG00000000613 I 0.927
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.885
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.868
FXR1 Macropus eugenii ENSMEUG00000004706 N 0.867
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.860
FMR1 Echinops telfairi ENSETEG00000006061 I 0.856
FXR1 Tupaia belangeri ENSTBEG00000007370 N 0.850
FMR1 Sus scrofa ENSSSCG00000012727 I 0.826
FMR1 Felis catus ENSFCAG00000007228 I 0.825
FMR1 Vicugna pacos ENSVPAG00000008700 I 0.820
FMR1 Pteropus vampyrus ENSPVAG00000013386 I 0.820
Ame_R006793 Ailuropoda melanoleuca Ame_R006793 I 0.813
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.776
FXR2 Otolemur garnettii ENSOGAG00000008146 N 0.767
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.759
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.759
FMR1 Dasypus novemcinctus ENSDNOG00000019486 I 0.755
FXR2 Ornithorhynchus anatinus ENSOANG00000005646 N 0.750
AAI70204 Xenopus laevis AAI70204 I 0.748
AAI12953 Xenopus laevis AAI12953 I 0.748
Q2KHP9 Xenopus laevis Q2KHP9 I 0.748
FMR1 Taeniopygia guttata ENSTGUG00000004735 I 0.747
FMR1 Monodelphis domestica ENSMODG00000005550 I 0.747
P51113 Xenopus laevis P51113 I 0.741
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.741
AAC59683 Xenopus laevis AAC59683 I 0.741
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.730
FXR1 Choloepus hoffmanni ENSCHOG00000012877 N 0.700