FMR1_RAT (Rattus norvegicus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSRNOG00000011900 T19432_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FMR1
M305_0.6 		Homo sapiens Sequence logo not available KAGCGRCUGG SELEX
Cook et al.(2011)
471_15805463.1 		0.948
FMR1
M304_0.6 		Homo sapiens Sequence logo not available GGGCKAAGGARK SELEX
Cook et al.(2011)
471_15805463 		0.948
FMR1
M016_0.6 		Homo sapiens KGACARG RNAcompete
Ray et al.(2013)
RNCMPT00016 		0.948
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000016227 KH 220 279
ENSRNOP00000016227 KH 283 395
ENSRNOP00000016366 KH 220 279
ENSRNOP00000016366 KH 283 342
ENSRNOP00000053381 KH 220 279
ENSRNOP00000053381 KH 283 342
ENSRNOP00000053384 KH 220 279
ENSRNOP00000053384 KH 283 341

Links

Other KH family RBPs
Other Rattus norvegicus RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Fmr1 Mus musculus ENSMUSG00000000838 I 0.983
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.958
FMR1 Macaca mulatta ENSMMUG00000015814 I 0.948
FMR1 Pan troglodytes ENSPTRG00000022349 I 0.948
FMR1 Homo sapiens ENSG00000102081 D 0.948
ENSPPYG00000020797 Pongo pygmaeus ENSPPYG00000020797 I 0.943
LOC100414871 Callithrix jacchus ENSCJAG00000003925 I 0.943
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.941
FMR1 Procavia capensis ENSPCAG00000011936 N 0.941
FMR1 Tursiops truncatus ENSTTRG00000000613 I 0.935
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.933
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.933
FMR1 Canis familiaris ENSCAFG00000019085 I 0.924
FMR1 Gorilla gorilla ENSGGOG00000010373 N 0.924
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.924
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.899
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.899
FMR1 Sorex araneus ENSSARG00000003475 N 0.891
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.882
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.876
FMR1 Echinops telfairi ENSETEG00000006061 I 0.871
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.851
FMR1 Felis catus ENSFCAG00000007228 I 0.847
Ame_R006793 Ailuropoda melanoleuca Ame_R006793 I 0.835
FMR1 Sus scrofa ENSSSCG00000012727 I 0.833
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.832
FMR1 Vicugna pacos ENSVPAG00000008700 I 0.827
FMR1 Pteropus vampyrus ENSPVAG00000013386 I 0.820
FMR1 Dasypus novemcinctus ENSDNOG00000019486 I 0.770
FMR1 Monodelphis domestica ENSMODG00000005550 I 0.747
FMR1 Taeniopygia guttata ENSTGUG00000004735 I 0.741
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.736
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.721
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.721
AAI12953 Xenopus laevis AAI12953 I 0.709
AAI70204 Xenopus laevis AAI70204 I 0.709
Q2KHP9 Xenopus laevis Q2KHP9 I 0.709
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.702
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.702
AAC59683 Xenopus laevis AAC59683 I 0.702
P51113 Xenopus laevis P51113 I 0.702