CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAEL000695
(
Aedes aegypti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAEL000695
T32308_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAEL000695-PA
RRM
6
74
LFVGMLSKKYHENDVRHLFSGHGSIEECTVLRDTSGQSKGCAFVTFATKQAAIGAIKSLHQSKTMEGCS
AAEL000695-PA
RRM
285
355
LFIYHLPQEFTDTDLASTFLPFGNVVSAKVFIDKQTNLSKCFGFVSFDNVASAQAAIQAMHGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Aedes aegypti
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP004950
Anopheles gambiae
AGAP004950
I
0.700
AGAP009477
Anopheles gambiae
AGAP009477
N
0.908
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.871
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.721
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.764
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.721
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.964
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.964
GF10965
Drosophila ananassae
FBgn0088005
I
0.700
GG13757
Drosophila erecta
FBgn0106020
I
0.700
aret
Drosophila melanogaster
FBgn0000114
D
0.780
bru-3
Drosophila melanogaster
FBgn0262350
D
0.700
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.871
GL18622
Drosophila persimilis
FBgn0156223
N
0.809
GL21647
Drosophila persimilis
FBgn0159240
I
0.700
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.857
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.714
GM24582
Drosophila sechellia
FBgn0179445
I
0.700
GD12651
Drosophila simulans
FBgn0184378
I
0.700
GK17101
Drosophila willistoni
FBgn0219100
I
0.700
GE20053
Drosophila yakuba
FBgn0237378
I
0.700
GE18585
Drosophila yakuba
FBgn0235992
N
0.843
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.721
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
0.721
PHUM315130
Pediculus humanus
PHUM315130
I
0.707
PHUM533900
Pediculus humanus
PHUM533900
N
0.743