CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF2
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000009330
T37828_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000009119
RRM
23
91
LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS
ENSGGOP00000009119
RRM
328
398
LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK
ENSGGOP00000019913
RRM
24
95
MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMH
ENSGGOP00000019913
RRM
116
184
LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS
ENSGGOP00000019913
RRM
413
483
LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
139 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF2
Pan troglodytes
ENSPTRG00000002284
N
1.000
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
1.000
Cugbp2
Rattus norvegicus
ENSRNOG00000023661
N
1.000
CELF2
Anolis carolinensis
ENSACAG00000007661
N
1.000
Ame_R017712
Ailuropoda melanoleuca
Ame_R017712
N
1.000
CELF2
Oryctolagus cuniculus
ENSOCUG00000004961
N
1.000
CELF2
Ochotona princeps
ENSOPRG00000011502
N
1.000
CELF2
Canis familiaris
ENSCAFG00000004973
N
1.000
CELF2
Tupaia belangeri
ENSTBEG00000007939
N
1.000
CELF2
Equus caballus
ENSECAG00000006649
N
1.000
CELF2
Cavia porcellus
ENSCPOG00000012567
N
1.000
CELF2
Erinaceus europaeus
ENSEEUG00000005658
N
1.000
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
1.000
CELF2
Homo sapiens
ENSG00000048740
N
1.000
CUGBP2-1
Taeniopygia guttata
ENSTGUG00000002136
N
1.000
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
1.000
ENSPPYG00000002083
Pongo pygmaeus
ENSPPYG00000002083
N
1.000
CELF2
Loxodonta africana
ENSLAFG00000013612
N
1.000
CELF2_CHICK
Gallus gallus
ENSGALG00000006713
N
1.000
CELF2
Macaca mulatta
ENSMMUG00000011468
N
1.000
Celf2
Mus musculus
ENSMUSG00000002107
N
1.000
CELF2
Microcebus murinus
ENSMICG00000007867
N
1.000
Q7ZXE2
Xenopus laevis
Q7ZXE2
N
0.995
AAB09041
Xenopus laevis
AAB09041
N
0.995
celf2
Xenopus tropicalis
ENSXETG00000021992
N
0.995
AAH45035
Xenopus laevis
AAH45035
N
0.995
CELF2
Takifugu rubripes
ENSTRUG00000010147
N
0.972
CELF2
Tetraodon nigroviridis
ENSTNIG00000007201
N
0.972
celf2
Danio rerio
ENSDARG00000002131
N
0.972
ACH69783
Xenopus laevis
ACH69783
N
0.958
CELF2
Choloepus hoffmanni
ENSCHOG00000002945
N
0.944
CELF1
Macropus eugenii
ENSMEUG00000007763
N
0.925
CELF1_CHICK
Gallus gallus
ENSGALG00000008097
N
0.925
CELF1
Anolis carolinensis
ENSACAG00000002114
N
0.925
CELF1
Monodelphis domestica
ENSMODG00000019913
N
0.925
CUGBP1
Taeniopygia guttata
ENSTGUG00000010377
N
0.925
CELF1
Meleagris gallopavo
ENSMGAG00000010629
N
0.925
CELF1
Ornithorhynchus anatinus
ENSOANG00000007896
N
0.920
LOC100392717
Callithrix jacchus
ENSCJAG00000020133
N
0.915
CELF1
Vicugna pacos
ENSVPAG00000000336
N
0.915
CELF1
Loxodonta africana
ENSLAFG00000003484
N
0.915
CELF1
Cavia porcellus
ENSCPOG00000007871
N
0.915
CELF1
Tursiops truncatus
ENSTTRG00000014157
N
0.915
CELF1
Equus caballus
ENSECAG00000007741
N
0.915
CELF1
Homo sapiens
ENSG00000149187
N
0.915
CELF1
Oryctolagus cuniculus
ENSOCUG00000001311
N
0.915
CELF1
Macaca mulatta
ENSMMUG00000011657
N
0.915
A7MB95_BOVIN
Bos taurus
ENSBTAG00000002520
N
0.915
CELF1
Canis familiaris
ENSCAFG00000008452
N
0.915
Ame_R009875
Ailuropoda melanoleuca
Ame_R009875
N
0.915
AAC41243
Xenopus laevis
AAC41243
N
0.906
celf1
Xenopus tropicalis
ENSXETG00000009044
N
0.906
O57406
Xenopus laevis
O57406
N
0.906
ENSPPYG00000003302
Pongo pygmaeus
ENSPPYG00000003302
N
0.906
Celf1
Mus musculus
ENSMUSG00000005506
N
0.906
AAI08575
Xenopus laevis
AAI08575
N
0.906
CELF1
Takifugu rubripes
ENSTRUG00000001711
N
0.906
Cugbp1
Rattus norvegicus
ENSRNOG00000010379
N
0.906
CELF1
Ochotona princeps
ENSOPRG00000003239
N
0.901
Celf1
Dipodomys ordii
ENSDORG00000013721
N
0.901
CELF2
Gasterosteus aculeatus
ENSGACG00000004426
N
0.897
celf1
Danio rerio
ENSDARG00000005315
N
0.896
CELF2
Tetraodon nigroviridis
ENSTNIG00000016009
N
0.892
CELF2
Oryzias latipes
ENSORLG00000003894
N
0.892
AAH57743
Xenopus laevis
AAH57743
N
0.892
AAH70706
Xenopus laevis
AAH70706
N
0.892
Q6PF35
Xenopus laevis
Q6PF35
N
0.892
CELF2
Takifugu rubripes
ENSTRUG00000016905
N
0.887
CELF1
Procavia capensis
ENSPCAG00000002631
N
0.882
CELF1
Microcebus murinus
ENSMICG00000007157
N
0.873
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.857
CELF2
Procavia capensis
ENSPCAG00000010882
N
0.849
CELF2
Macropus eugenii
ENSMEUG00000015276
N
0.844
CELF2
Tursiops truncatus
ENSTTRG00000014665
N
0.830
CELF1
Gasterosteus aculeatus
ENSGACG00000014226
N
0.812
CELF2
Monodelphis domestica
ENSMODG00000016763
N
0.802
Celf2
Dipodomys ordii
ENSDORG00000006455
N
0.798
CELF2
Vicugna pacos
ENSVPAG00000009360
N
0.797
e_gw.91.28.1
Branchiostoma floridae
e_gw.91.28.1
I
0.797
CELF2
Tarsius syrichta
ENSTSYG00000005118
N
0.797
CELF2
Oryzias latipes
ENSORLG00000017111
N
0.789
CELF1
Pan troglodytes
ENSPTRG00000003568
N
0.788
CELF1
Sorex araneus
ENSSARG00000003207
N
0.788
CELF1
Erinaceus europaeus
ENSEEUG00000009782
N
0.788
CELF1
Tupaia belangeri
ENSTBEG00000005140
N
0.778
CELF2
Echinops telfairi
ENSETEG00000008414
N
0.776
CELF1
Choloepus hoffmanni
ENSCHOG00000004196
N
0.775
CELF1
Dasypus novemcinctus
ENSDNOG00000009523
N
0.774
CELF1
Myotis lucifugus
ENSMLUG00000016631
N
0.765
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.743
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.743
CELF1
Pteropus vampyrus
ENSPVAG00000007340
N
0.741
CELF1
Tarsius syrichta
ENSTSYG00000003866
N
0.741
CELF1
Gorilla gorilla
ENSGGOG00000004106
N
0.737
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.736
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.736
GD12651
Drosophila simulans
FBgn0184378
I
0.729
GJ13842
Drosophila virilis
FBgn0201061
I
0.729
GK17101
Drosophila willistoni
FBgn0219100
I
0.729
GE20053
Drosophila yakuba
FBgn0237378
I
0.729
bru-3
Drosophila melanogaster
FBgn0262350
D
0.729
GI13095
Drosophila mojavensis
FBgn0135852
I
0.729
GH14684
Drosophila grimshawi
FBgn0122160
I
0.729
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.729
GF10965
Drosophila ananassae
FBgn0088005
I
0.729
GG13757
Drosophila erecta
FBgn0106020
I
0.729
PHUM315130
Pediculus humanus
PHUM315130
I
0.729
GM24582
Drosophila sechellia
FBgn0179445
I
0.729
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.729
AGAP004950
Anopheles gambiae
AGAP004950
I
0.721
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.721
GL21647
Drosophila persimilis
FBgn0159240
I
0.721
AAEL014033
Aedes aegypti
AAEL014033
I
0.721
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.721
AAEL000695
Aedes aegypti
AAEL000695
I
0.721
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.721
LOAG_05508
Loa loa
LOAG_05508
I
0.721
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.721
CELF2
Meleagris gallopavo
ENSMGAG00000004551
N
0.721
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.721
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.721
CELF1
Takifugu rubripes
ENSTRUG00000000617
N
0.718
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.714
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.714
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.714
ENSCING00000003762
Ciona intestinalis
ENSCING00000003762
N
0.709
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.707
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.707
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.707
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.707
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.707
e_gw1.172.82.1
Capitella teleta
e_gw1.172.82.1
I
0.705
DGIL_AUG5s6024g1t1
Acyrtosiphon pisum
DGIL_AUG5s6024g1t1
N
0.704
90208
Helobdella robusta
90208
I
0.702
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.700
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.700
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.700
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.700
CELF2
Sus scrofa
ENSSSCG00000011121
N
0.700