ENSCJAG00000005326 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000005326 T35521_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.832
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.832
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.832
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.818
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000009741 RRM 16 84
ENSCJAP00000009741 RRM 106 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

258 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s14032g4t1 Acyrtosiphon pisum DGIL_AUG5s14032g4t1 N 0.000
AAEL009694 Aedes aegypti AAEL009694 N 0.000
amel4_ncbi_hmm3083 Apis mellifera amel4_ncbi_hmm3083 N 0.000
BGIBMGA014155 Bombyx mori BGIBMGA014155 N 0.000
CpipJ_CPIJ014324 Culex pipiens CpipJ_CPIJ014324 N 0.000
CPIJ014324 Culex quinquefasciatus CPIJ014324 N 0.000
GF11894 Drosophila ananassae FBgn0088934 N 0.000
GF13124 Drosophila ananassae FBgn0090157 N 0.000
GG21049 Drosophila erecta FBgn0113232 N 0.000
GG20683 Drosophila erecta FBgn0112870 N 0.000
GH21368 Drosophila grimshawi FBgn0128830 N 0.000
GH21401 Drosophila grimshawi FBgn0128863 N 0.000
CG10384 Drosophila melanogaster FBgn0034731 N 0.000
qkr54B Drosophila melanogaster FBgn0022987 N 0.000
GI20563 Drosophila mojavensis FBgn0143299 N 0.000
GI18580 Drosophila mojavensis FBgn0141319 N 0.000
GL11428 Drosophila persimilis FBgn0149037 N 0.000
GA18453-RA Drosophila pseudoobscura FBgn0078455 N 0.000
GA10291-RA Drosophila pseudoobscura FBgn0070349 N 0.000
GM21780 Drosophila sechellia FBgn0176658 N 0.000
GM15914 Drosophila sechellia FBgn0170830 N 0.000
GD11271 Drosophila simulans FBgn0183021 N 0.000
GD11672 Drosophila simulans FBgn0183412 N 0.000
GJ20374 Drosophila virilis FBgn0207514 N 0.000
GJ19910 Drosophila virilis FBgn0207052 N 0.000
GK17902 Drosophila willistoni FBgn0219901 N 0.000
GK22901 Drosophila willistoni FBgn0224863 N 0.000
GE11667 Drosophila yakuba FBgn0229463 N 0.000
nasonia_NCBI_hmm272534 Nasonia vitripennis nasonia_NCBI_hmm272534 N 0.000