ENSCJAG00000005326 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000005326 T35521_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.832
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.832
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.832
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.818
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000009741 RRM 16 84
ENSCJAP00000009741 RRM 106 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

258 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.825
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.825
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.825
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.825
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.825
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.825
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.825
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.825
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.825
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.825
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.825
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.825
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.825
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.825
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.825
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.825
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.825
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.825
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.825
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.825
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.825
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.825
HNRNPA1 Homo sapiens ENSG00000135486 D 0.825
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.825
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.825
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.825
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.825
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.825
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.818
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.818
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.818
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.818
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.818
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.818
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.818
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.816
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.816
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.811
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.811
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.811
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.811
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.811
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.811
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.811
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.811
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.811
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.811
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.811
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.804
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.804
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.804
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.804
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.804
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.804
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.797
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.797
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.797
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.797
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.797
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.797
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.797
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.797
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.797
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.792
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.792
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.790
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.790
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.786
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.785
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.785
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.785
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.783
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.783
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.783
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.783
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.783
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.783
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.783
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.782
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.779
LOC785445 Bos taurus ENSBTAG00000025621 I 0.778
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.776
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.776
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.776
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.775
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.773
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.772
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.771
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.771
LOC100054206 Equus caballus ENSECAG00000006699 I 0.769
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.769
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.764
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.764
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.764
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.762
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.762
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.762
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.762
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.762
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.759
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.757
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.757
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.757
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.757
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.757
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.757
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.757
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.755
CBU92428 Xenopus laevis CBU92428 I 0.755
AAA49742 Xenopus laevis AAA49742 I 0.755
AAA49741 Xenopus laevis AAA49741 I 0.755
AAH72090 Xenopus laevis AAH72090 I 0.755
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.755
CBF67555 Xenopus laevis CBF67555 I 0.755
CBU92546 Xenopus laevis CBU92546 I 0.755
AAH45260 Xenopus laevis AAH45260 I 0.755
P17130 Xenopus laevis P17130 I 0.755
CBF67672 Xenopus laevis CBF67672 I 0.755
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.755
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.754
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.750
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.750
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.750
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.750
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.748
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.748
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.748
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.748
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.745
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.745
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.743
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.743
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.743
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.743
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.743
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.741
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.741
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.741
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.739
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.739
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.736
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.736
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.736
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.736
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.736
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.736
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.736
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.734
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.734
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.734
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.729
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.729
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.729
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.729
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.727
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.727
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.725
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.725
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.725
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.725
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.724
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.724
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.722
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.722
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.722
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.722
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.721
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.721
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.720
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.720
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.718
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.718
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.717
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.716
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.716
HNRNPA3 Homo sapiens ENSG00000170144 I 0.715
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.715
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.715
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.715
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.715
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.715
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.715
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.715
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.715
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.715
LOC781499 Bos taurus ENSBTAG00000021580 I 0.715
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.715
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.715
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.715
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.715
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.715
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.715
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.715
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.715
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.715
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.715
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.715
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.715
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.715
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.715
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.713
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.713
LOC100066794 Equus caballus ENSECAG00000023237 I 0.713
AAA49949 Xenopus laevis AAA49949 I 0.713
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.713
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.713
Gm8991 Mus musculus ENSMUSG00000059179 I 0.713
P51968 Xenopus laevis P51968 I 0.713
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.713
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.713
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.713
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.711
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
AAA49950 Xenopus laevis AAA49950 I 0.710
AAI69881 Xenopus laevis AAI69881 I 0.710
CBU92451 Xenopus laevis CBU92451 I 0.710
P51992 Xenopus laevis P51992 I 0.710
CBF67578 Xenopus laevis CBF67578 I 0.710
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.709
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.709
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.708
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.708
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.707
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.707
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.707
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.704
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.703
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.701
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.700
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.700
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.700
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.700
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.700
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.700
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.700
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.700
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.700
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.700
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.700
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.700
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.700
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.700
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.700
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.700
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.700
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.700
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.700
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.700
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.700
LOC100068539 Equus caballus ENSECAG00000000782 I 0.700
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.700
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.700
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.700
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.700
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.700
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.700
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.700
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.700