RBFOX2 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000022180 T35899_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		1.000
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		1.000
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.986
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.913
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000020037 RRM 143 211

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_04655 Chaetomium globosum CHGG_04655 N 0.000
GLRG_05733 Colletotrichum graminicola GLRG_05733 N 0.000
estExt_fgenesh1_pg.C_30620 Cryphonectria parasitica estExt_fgenesh1_pg.C_30620 N 0.000
FOXG_08275 Fusarium oxysporum FOXG_08275 N 0.000
fgenesh1_pm.1_#_413 Myceliophthora thermophila fgenesh1_pm.1_#_413 N 0.000
fgenesh1_pm.sca_18_chr2_1_0000466 Nectria haematococca fgenesh1_pm.sca_18_chr2_1_0000466 N 0.000
NCU09742 Neurospora crassa NCU09742 N 0.000
e_gw1.3.1867.1 Neurospora discreta e_gw1.3.1867.1 N 0.000
fgenesh1_pm.C_scaffold_4000255 Neurospora tetrasperma fgenesh1_pm.C_scaffold_4000255 N 0.000
Pa_6_3170 Podospora anserina Pa_6_3170 N 0.000
fgenesh2_pg.1_#_466 Thielavia terrestris fgenesh2_pg.1_#_466 N 0.000
fgenesh1_pg.C_scaffold_2000270 Trichoderma atroviride fgenesh1_pg.C_scaffold_2000270 N 0.000
e_gw1.2.858.1 Trichoderma reesei e_gw1.2.858.1 N 0.000
VDBG_08298 Verticillium albo atrum VDBG_08298 N 0.000