CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000011899
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000011899
T40530_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000013279
RRM
282
345
MTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMK
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EIF3G_AEDAE
Aedes aegypti
AAEL012661
N
0.000
EIF3G_ANOGA
Anopheles gambiae
AGAP007668
N
0.000
amel4_ncbi_hmm3734
Apis mellifera
amel4_ncbi_hmm3734
N
0.000
CpipJ_CPIJ000190
Culex pipiens
CpipJ_CPIJ000190
N
0.000
CpipJ_CPIJ015350
Culex pipiens
CpipJ_CPIJ015350
N
0.000
CPIJ015350
Culex quinquefasciatus
CPIJ015350
N
0.000
EIF3G_CULQU
Culex quinquefasciatus
CPIJ000190
N
0.000
GF21942
Drosophila ananassae
FBgn0098942
N
0.000
GF23028
Drosophila ananassae
FBgn0100022
N
0.000
GG23911
Drosophila erecta
FBgn0116050
N
0.000
GG12605
Drosophila erecta
FBgn0104893
N
0.000
GH21559
Drosophila grimshawi
FBgn0129021
N
0.000
GH17626
Drosophila grimshawi
FBgn0125096
N
0.000
GH17624
Drosophila grimshawi
FBgn0125094
N
0.000
GH14150
Drosophila grimshawi
FBgn0121626
N
0.000
CG10881
Drosophila melanogaster
FBgn0038796
N
0.000
CG8636
Drosophila melanogaster
FBgn0029629
N
0.000
GI16065
Drosophila mojavensis
FBgn0138814
N
0.000
GI22232
Drosophila mojavensis
FBgn0144960
N
0.000
GL12937
Drosophila persimilis
FBgn0150543
N
0.000
GL23467
Drosophila persimilis
FBgn0161057
N
0.000
GA21226-RA
Drosophila pseudoobscura
FBgn0081214
N
0.000
GA10616-RA
Drosophila pseudoobscura
FBgn0070673
N
0.000
GM23111
Drosophila sechellia
FBgn0177979
N
0.000
GM18870
Drosophila sechellia
FBgn0173773
N
0.000
GD19352
Drosophila simulans
FBgn0190854
N
0.000
GD24609
Drosophila simulans
FBgn0195937
N
0.000
GJ15710
Drosophila virilis
FBgn0202898
N
0.000
GJ23035
Drosophila virilis
FBgn0210137
N
0.000
GK16326
Drosophila willistoni
FBgn0218328
N
0.000
GK22449
Drosophila willistoni
FBgn0224426
N
0.000
GE25664
Drosophila yakuba
FBgn0242726
N
0.000
GE11159
Drosophila yakuba
FBgn0228983
N
0.000
GE16936
Drosophila yakuba
FBgn0234424
N
0.000
nasonia_NCBI_hmm600384
Nasonia vitripennis
nasonia_NCBI_hmm600384
N
0.000
PHUM467340
Pediculus humanus
PHUM467340
N
0.000