CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH1
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000007485
T42772_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.748
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000006964
RRM
4
51
QNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSVPAP00000006964
RRM
103
149
IVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSVPAP00000006964
RRM
258
325
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.776
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.752
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.710
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.776
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.752
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.809
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.776
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.776
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.752
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.776
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.752
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.876
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.705
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.776
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.752
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.780
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.752
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.876
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.844
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.798
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.752
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.776
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.748
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.776
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.809
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.771
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.748
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.752
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.771
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.748
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.776
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.752
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.771
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.776
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.752
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.752
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.866
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.748
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.776
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.748
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.776
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.748
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.752
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.776
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.748
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.866
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.752
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.776
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.849
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.876
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.752
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.752
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.855
AAH77770
Xenopus laevis
AAH77770
I
0.710
AAI10708
Xenopus laevis
AAI10708
I
0.710
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.714