CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH2
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000008416
T36929_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.995
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000006840
RRM
13
84
VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSETEP00000006840
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSETEP00000006840
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
1.000
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
1.000
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
1.000
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
1.000
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
1.000
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
1.000
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
1.000
LOC100057665
Equus caballus
ENSECAG00000023575
I
1.000
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
1.000
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
1.000
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
1.000
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
1.000
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.995
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.995
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.995
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.995
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.995
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.995
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.990
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.990
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.990
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.971
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.971
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.971
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.971
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.971
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.971
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.971
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.971
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.971
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.971
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.971
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.971
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.971
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.971
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.971
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.971
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.962
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.952
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.943
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.943
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.943
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.914
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.905
AAI10708
Xenopus laevis
AAI10708
I
0.900
AAH77770
Xenopus laevis
AAH77770
I
0.900
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.900
AAH70969
Xenopus laevis
AAH70969
I
0.881
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.876
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.876
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.862
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.862
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.862
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.862
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.852
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.852
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.852
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.848
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.848
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.848
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.848
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.848
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.843
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.843
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.843
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.843
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.843
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.843
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.843
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.843
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.843
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.838
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.838
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.838
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.838
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.838
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.838
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.838
HNRNPF
Homo sapiens
ENSG00000169813
I
0.838
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.833
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.833
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.814
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.795
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.795
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.752
HNRNPH1
Vicugna pacos
ENSVPAG00000007485
I
0.752
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.752
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.743
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.738
HNRNPH3
Oryzias latipes
ENSORLG00000010499
I
0.733
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.733
HNRNPH1
Pteropus vampyrus
ENSPVAG00000007670
I
0.724
HNRNPF
Myotis lucifugus
ENSMLUG00000007261
I
0.724
ENSCJAG00000008291
Callithrix jacchus
ENSCJAG00000008291
I
0.714