CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH2
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000015400
T37150_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.938
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000014279
RRM
3
62
DEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSFCAP00000014279
RRM
91
160
VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSFCAP00000014279
RRM
269
336
VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
91 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.943
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.943
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.943
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.943
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.943
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.943
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.943
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.943
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.943
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.943
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.943
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.943
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.943
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.938
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.938
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.938
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.938
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.938
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.938
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.933
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.933
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.933
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.919
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.914
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.914
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.914
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.914
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.914
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.914
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.914
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.914
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.914
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.914
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.914
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.914
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.914
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.914
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.914
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.914
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.914
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.914
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.914
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.905
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.904
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.894
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.894
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.890
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.890
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.884
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.857
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.852
AAH77770
Xenopus laevis
AAH77770
I
0.848
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.848
AAI10708
Xenopus laevis
AAI10708
I
0.848
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.838
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.833
AAH70969
Xenopus laevis
AAH70969
I
0.829
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.819
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.805
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.800
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.800
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.800
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.800
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.800
HNRNPH1
Vicugna pacos
ENSVPAG00000007485
I
0.798
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.795
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.795
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.795
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.795
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.795
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.795
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.795
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.795
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.790
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.790
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.790
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.790
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.790
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.790
HNRNPF
Homo sapiens
ENSG00000169813
I
0.790
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.790
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.786
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.767
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.760
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.748
HNRNPF
Felis catus
ENSFCAG00000006794
N
0.732
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.729
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.714
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.705
HNRNPH1
Spermophilus tridecemlineatus
ENSSTOG00000016376
N
0.702
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.700