CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH2
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000003333
T40307_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.986
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000003083
RRM
13
84
VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSPCAP00000003083
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSPCAP00000003083
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKHKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.990
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.990
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.990
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.990
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.990
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.990
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.990
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.990
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.990
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.990
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.990
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.990
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.990
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.990
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.990
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.986
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.986
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.986
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.986
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.986
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.986
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.962
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.962
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.962
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.962
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.962
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.962
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.962
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.962
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.962
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.962
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.962
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.962
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.962
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.962
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.962
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.962
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.962
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.943
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.943
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.943
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.933
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.905
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.900
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.895
AAI10708
Xenopus laevis
AAI10708
I
0.890
AAH77770
Xenopus laevis
AAH77770
I
0.890
AAH70969
Xenopus laevis
AAH70969
I
0.871
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.867
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.867
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.857
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.857
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.857
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.852
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.852
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.848
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.848
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.848
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.848
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.848
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.848
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.843
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.843
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.843
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.843
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.843
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.843
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.843
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.843
HNRNPF
Homo sapiens
ENSG00000169813
I
0.838
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.838
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.838
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.838
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.838
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.838
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.838
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.838
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.838
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.838
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.833
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.829
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.814
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.795
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.790
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.752
HNRNPH1
Vicugna pacos
ENSVPAG00000007485
I
0.748
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.748
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.743
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.738
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.733
HNRNPH3
Oryzias latipes
ENSORLG00000010499
I
0.733
HNRNPF
Myotis lucifugus
ENSMLUG00000007261
I
0.724
HNRNPH1
Pteropus vampyrus
ENSPVAG00000007670
I
0.714
ENSCJAG00000008291
Callithrix jacchus
ENSCJAG00000008291
I
0.710