CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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hnrnph1l
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000005551
T36042_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.895
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000027385
RRM
9
80
VRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAVKKDRESMGHRYVE
ENSDARP00000027385
RRM
109
178
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIE
ENSDARP00000027385
RRM
256
323
VHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
ENSDARP00000065446
RRM
11
74
LDVARKRLCSFFQQRLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIE
ENSDARP00000065446
RRM
152
219
VHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
132 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.929
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.919
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.919
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.914
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.914
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.910
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.910
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.910
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.910
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.910
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.910
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.910
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.910
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.910
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.910
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.910
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.910
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.910
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.910
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.905
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.905
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.905
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.900
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.900
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.900
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.900
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.900
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.900
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.900
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.900
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.900
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.900
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.900
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.900
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.900
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.900
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.900
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.900
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.895
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.895
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.895
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.895
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.895
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.895
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.895
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.886
AAI10708
Xenopus laevis
AAI10708
I
0.881
AAH77770
Xenopus laevis
AAH77770
I
0.881
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.876
AAH70969
Xenopus laevis
AAH70969
I
0.871
HNRNPH1
Ochotona princeps
ENSOPRG00000003513
N
0.848
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.848
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.843
HNRNPH1
Procavia capensis
ENSPCAG00000006715
N
0.835
ENSEEUG00000013364
Erinaceus europaeus
ENSEEUG00000013364
N
0.835
HNRNPH1
Macaca mulatta
ENSMMUG00000010843
N
0.835
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.833
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.833
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.833
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.833
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.833
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.833
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.833
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.833
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.833
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.833
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.829
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.829
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.829
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.829
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.829
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.829
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.829
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.829
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.829
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.829
HNRNPF
Homo sapiens
ENSG00000169813
I
0.829
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.814
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.814
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.814
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.810
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.805
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.800
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.800
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.795
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.786
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.786
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.757
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.757
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.752
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.748
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.748
HNRNPH3
Oryzias latipes
ENSORLG00000010499
I
0.743
HNRNPH3
Choloepus hoffmanni
ENSCHOG00000012954
N
0.735
Ame_R001515
Ailuropoda melanoleuca
Ame_R001515
N
0.734
LOC100392844
Callithrix jacchus
ENSCJAG00000019154
N
0.734
HNRNPH3
Vicugna pacos
ENSVPAG00000011814
N
0.734
HNRNPH3
Bos taurus
ENSBTAG00000014316
N
0.734
HNRNPH3
Canis familiaris
ENSCAFG00000013619
N
0.734
HNRNPH3
Cavia porcellus
ENSCPOG00000006397
N
0.734
ENSPPYG00000002397
Pongo pygmaeus
ENSPPYG00000002397
N
0.734
HNRNPH3
Pteropus vampyrus
ENSPVAG00000008037
N
0.734
HNRNPH3
Loxodonta africana
ENSLAFG00000012955
N
0.734
HNRNPH3
Myotis lucifugus
ENSMLUG00000000143
N
0.734
HNRNPH3
Pan troglodytes
ENSPTRG00000002553
N
0.734
HNRNPH3
Oryctolagus cuniculus
ENSOCUG00000004443
N
0.734
HNRNPH3
Macaca mulatta
ENSMMUG00000009792
N
0.734
Hnrnph3
Mus musculus
ENSMUSG00000020069
N
0.734
HNRNPH3
Gorilla gorilla
ENSGGOG00000025378
N
0.734
HNRNPH3
Homo sapiens
ENSG00000096746
N
0.734
HNRNPH3
Tursiops truncatus
ENSTTRG00000013322
N
0.734
LOC100063127
Equus caballus
ENSECAG00000007190
N
0.734
Hnrnph3
Rattus norvegicus
ENSRNOG00000026849
N
0.734
HNRNPH3
Spermophilus tridecemlineatus
ENSSTOG00000011676
N
0.734
HNRNPH3
Sus scrofa
ENSSSCG00000010238
N
0.734
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.733
HNRNPF
Myotis lucifugus
ENSMLUG00000007261
I
0.729
HNRNPH3
Monodelphis domestica
ENSMODG00000017283
N
0.727
Q5F3D2_CHICK
Gallus gallus
ENSGALG00000003947
N
0.727
HNRNPH3
Ochotona princeps
ENSOPRG00000014850
N
0.727
HNRNPH3
Ornithorhynchus anatinus
ENSOANG00000002260
N
0.727
HNRNPH3
Sorex araneus
ENSSARG00000013863
N
0.727
HNRNPH3
Taeniopygia guttata
ENSTGUG00000003609
N
0.727
HNRNPH3
Anolis carolinensis
ENSACAG00000010365
N
0.727
hnrnph3
Xenopus tropicalis
ENSXETG00000023567
N
0.719
LOC100407750
Callithrix jacchus
ENSCJAG00000022707
N
0.719
HNRNPH3
Macropus eugenii
ENSMEUG00000013139
N
0.719
ENSMICG00000016899
Microcebus murinus
ENSMICG00000016899
N
0.719
HNRNPH1
Pteropus vampyrus
ENSPVAG00000007670
I
0.719
AAH82630
Xenopus laevis
AAH82630
N
0.712
HNRNPH3
Procavia capensis
ENSPCAG00000000111
N
0.705
HNRNPH1
Vicugna pacos
ENSVPAG00000007485
I
0.705