CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH1
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000169045
T37312_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.967
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000327539
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000327539
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSP00000327539
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
ENSP00000349168
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000349168
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSP00000349168
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
ENSP00000377082
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000377082
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSP00000377082
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
ENSP00000397797
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000397797
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSP00000397797
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
ENSP00000420850
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000420850
RRM
113
143
VRLRGLPFGCSKEEIVQFFSGILKSLRAVEL
ENSP00000421695
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000421695
RRM
113
130
VRLRGLPFGCSKEEIVQF
ENSP00000423140
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000423140
RRM
113
143
VRLRGLPFGCSKEEIVQFFSGILKSLRAVEL
ENSP00000424087
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000424087
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSP00000425343
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000425732
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000425732
RRM
113
143
VRLRGLPFGCSKEEIVQFFSGILKSLRAVEL
ENSP00000425851
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000425851
RRM
113
143
VRLRGLPFGCSKEEIVQFFSGILKSLRAVEL
ENSP00000426275
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000426275
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSP00000426275
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
ENSP00000426518
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000426518
RRM
113
163
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQE
ENSP00000427388
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000427388
RRM
113
168
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKA
ENSP00000427408
RRM
13
84
VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSP00000427408
RRM
113
137
VRLRGLPFGCSKEEIVQFFSGMSDH
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
100 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
1.000
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
1.000
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
1.000
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
1.000
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
1.000
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
1.000
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
1.000
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
1.000
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
1.000
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
1.000
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
1.000
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
1.000
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
1.000
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.990
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.990
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.990
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.981
HNRNPH2
Erinaceus europaeus
ENSEEUG00000015697
N
0.972
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.971
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.971
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.971
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.971
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.971
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.971
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.971
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.971
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.971
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.971
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.971
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.971
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.971
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.967
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.967
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.967
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.967
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.967
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.967
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.967
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.967
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.962
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.962
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.962
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.929
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.914
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.914
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.910
AAH77770
Xenopus laevis
AAH77770
I
0.910
AAI10708
Xenopus laevis
AAI10708
I
0.910
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.895
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.895
AAH70969
Xenopus laevis
AAH70969
I
0.890
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.886
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.886
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.886
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.881
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.876
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.876
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.871
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.871
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.867
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.867
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.867
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.867
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.867
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.867
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.867
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.867
hnrnph1
Danio rerio
ENSDARG00000040881
N
0.866
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.862
HNRNPF
Homo sapiens
ENSG00000169813
I
0.862
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.862
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.862
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.862
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.862
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.862
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.862
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.862
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.862
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.862
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.862
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.857
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.852
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.852
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.838
ENSEEUG00000010991
Erinaceus europaeus
ENSEEUG00000010991
N
0.831
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.819
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.814
HNRNPH1
Tupaia belangeri
ENSTBEG00000012210
N
0.803
HNRNPH1
Vicugna pacos
ENSVPAG00000007485
I
0.776
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.767
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.762
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.752
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.748
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.748
HNRNPH3
Oryzias latipes
ENSORLG00000010499
I
0.743
HNRNPF
Myotis lucifugus
ENSMLUG00000007261
I
0.743
HNRNPH1
Pteropus vampyrus
ENSPVAG00000007670
I
0.743
ENSCJAG00000008291
Callithrix jacchus
ENSCJAG00000008291
I
0.733
HNRNPF
Felis catus
ENSFCAG00000006794
N
0.705