cassava25244.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava25244.valid.m1 T49235_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava25244.valid.m1 RRM 6 73

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.714
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.710
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.714
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.710
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.739
PK05006.1 Cannabis sativa PK05006.1 N 0.797
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.750
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.739
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.739
MDP0000596287 Malus x domestica MDP0000596287 N 0.725
MDP0000177505 Malus x domestica MDP0000177505 N 0.754
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.971
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.779
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.739
mgf014593m Mimulus guttatus mgf014593m N 0.710
mgf007506m Mimulus guttatus mgf007506m N 0.750
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.725
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.725
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.725
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.838
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.797
ppa024222m Prunus persica ppa024222m N 0.710
30073.m002271 Ricinus communis 30073.m002271 N 0.783
29682.m000595 Ricinus communis 29682.m000595 N 0.853
SB01G010170 Sorghum bicolor Sb01g010170 N 0.710
SB10G000940 Sorghum bicolor Sb10g000940 N 0.725
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.768
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.768
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.710
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.710
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.710
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.710