CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava25244.valid.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava25244.valid.m1
T49235_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava25244.valid.m1
RRM
6
73
VKVSNVSIGATERDLKEFFSFSGDIEYVEVHRCSDNEQSQVAYVTFKDSQGAETAVLLSGATIVDLAV
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R015152
Ailuropoda melanoleuca
Ame_R015152
N
0.000
RNPS1
Anolis carolinensis
ENSACAG00000004088
N
0.000
amel4_ncbi_hmm8263
Apis mellifera
amel4_ncbi_hmm8263
N
0.000
RNPS1_BOVIN
Bos taurus
ENSBTAG00000009969
N
0.000
LOC100403592
Callithrix jacchus
ENSCJAG00000014969
N
0.000
RNPS1
Canis familiaris
ENSCAFG00000019397
N
0.000
RNPS1
Cavia porcellus
ENSCPOG00000002066
N
0.000
RNPS1
Choloepus hoffmanni
ENSCHOG00000004866
N
0.000
Rnps1
Dipodomys ordii
ENSDORG00000001755
N
0.000
LOC100065738
Equus caballus
ENSECAG00000023288
N
0.000
RNPS1
Erinaceus europaeus
ENSEEUG00000005933
N
0.000
RNPS1
Felis catus
ENSFCAG00000007690
N
0.000
RNPS1
Gallus gallus
ENSGALG00000009288
N
0.000
RNPS1
Gasterosteus aculeatus
ENSGACG00000005641
N
0.000
RNPS1
Gasterosteus aculeatus
ENSGACG00000011261
N
0.000
ENSGGOG00000014275
Gorilla gorilla
ENSGGOG00000014275
N
0.000
RNPS1
Homo sapiens
ENSG00000205937
N
0.000
RNPS1
Loxodonta africana
ENSLAFG00000000728
N
0.000
LOC695816
Macaca mulatta
ENSMMUG00000019238
N
0.000
RNPS1
Macropus eugenii
ENSMEUG00000008882
N
0.000
RNPS1
Meleagris gallopavo
ENSMGAG00000010042
N
0.000
RNPS1
Monodelphis domestica
ENSMODG00000015891
N
0.000
Rnps1
Mus musculus
ENSMUSG00000034681
N
0.000
nasonia_NCBI_hmm458514
Nasonia vitripennis
nasonia_NCBI_hmm458514
N
0.000
RNPS1
Ochotona princeps
ENSOPRG00000016422
N
0.000
ENSOCUG00000027449
Oryctolagus cuniculus
ENSOCUG00000027449
N
0.000
RNPS1
Oryctolagus cuniculus
ENSOCUG00000004387
N
0.000
ENSOCUG00000021516
Oryctolagus cuniculus
ENSOCUG00000021516
N
0.000
RNPS1
Oryzias latipes
ENSORLG00000008033
N
0.000
RNPS1
Oryzias latipes
ENSORLG00000018532
N
0.000
RNPS1
Pan troglodytes
ENSPTRG00000031310
N
0.000
RNPS1
Procavia capensis
ENSPCAG00000004514
N
0.000
RNPS1
Pteropus vampyrus
ENSPVAG00000005105
N
0.000
Rnps1
Rattus norvegicus
ENSRNOG00000008703
N
0.000
ENSRNOG00000021566
Rattus norvegicus
ENSRNOG00000021566
N
0.000
LOC688526
Rattus norvegicus
ENSRNOG00000027239
N
0.000
RNPS1
Sorex araneus
ENSSARG00000001577
N
0.000
RNPS1
Spermophilus tridecemlineatus
ENSSTOG00000013200
N
0.000
RNPS1
Sus scrofa
ENSSSCG00000008048
N
0.000
RNPS1
Taeniopygia guttata
ENSTGUG00000003237
N
0.000
RNPS1
Takifugu rubripes
ENSTRUG00000008602
N
0.000
RNPS1
Takifugu rubripes
ENSTRUG00000017161
N
0.000
RNPS1
Tarsius syrichta
ENSTSYG00000001629
N
0.000
RNPS1
Tetraodon nigroviridis
ENSTNIG00000007411
N
0.000
RNPS1
Tetraodon nigroviridis
ENSTNIG00000009753
N
0.000
RNPS1
Tupaia belangeri
ENSTBEG00000009098
N
0.000
RNPS1
Tursiops truncatus
ENSTTRG00000008220
N
0.000
AAH84646
Xenopus laevis
AAH84646
N
0.000
AAI06520
Xenopus laevis
AAI06520
N
0.000
Q3KPW1
Xenopus laevis
Q3KPW1
N
0.000
Q5XG24
Xenopus laevis
Q5XG24
N
0.000
rnps1
Xenopus tropicalis
ENSXETG00000024439
N
0.000