XP_001196183.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001196183.1 T58962_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001196183.1 RRM 60 129
XP_001196183.1 RRM 140 205
XP_001196183.1 RRM 235 299

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.701
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.729
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.724
RBM46 Bos taurus ENSBTAG00000001696 I 0.734
A1CF Bos taurus ENSBTAG00000021195 I 0.706
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.752
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.757
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.764
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.701
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.729
RBM46 Canis familiaris ENSCAFG00000008473 I 0.729
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.740
A1CF Cavia porcellus ENSCPOG00000009807 I 0.701
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.719
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.719
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.701
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.729
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.703
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.703
a1cf Danio rerio ENSDARG00000002968 I 0.725
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.724
RBM46 Echinops telfairi ENSETEG00000014902 I 0.729
RBM46 Equus caballus ENSECAG00000007649 I 0.734
A1CF Equus caballus ENSECAG00000010424 I 0.701
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.719
RBM46 Felis catus ENSFCAG00000009246 I 0.719
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.725
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.729
RBM46 Homo sapiens ENSG00000151962 D 0.729
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.729
A1CF Loxodonta africana ENSLAFG00000015462 I 0.701
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.729
A1CF Macaca mulatta ENSMMUG00000007077 I 0.701
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.729
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.729
A1cf Mus musculus ENSMUSG00000052595 I 0.701
Rbm46 Mus musculus ENSMUSG00000033882 I 0.724
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.724
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.714
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.729
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.701
A1CF Oryzias latipes ENSORLG00000013342 I 0.706
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.729
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.701
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.729
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.729
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.729
RBM46 Sorex araneus ENSSARG00000006520 I 0.729
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 1.000
A1CF Sus scrofa ENSSSCG00000010431 I 0.701
RBM46 Sus scrofa ENSSSCG00000008994 I 0.729
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.723
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.701
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.706
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.729
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.706
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.701
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.719
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.719