A1CF (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000013342 T40209_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.867
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.837
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000016722 RRM 59 128
ENSORLP00000016722 RRM 139 204
ENSORLP00000016722 RRM 234 298

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.926
a1cf Danio rerio ENSDARG00000002968 I 0.921
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.901
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.897
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.881
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.871
A1CF Sus scrofa ENSSSCG00000010431 I 0.871
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.871
A1CF Loxodonta africana ENSLAFG00000015462 I 0.871
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.871
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.868
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.867
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.867
A1CF Equus caballus ENSECAG00000010424 I 0.866
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.866
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.866
A1CF Macaca mulatta ENSMMUG00000007077 I 0.866
A1CF Cavia porcellus ENSCPOG00000009807 I 0.866
A1CF Bos taurus ENSBTAG00000021195 I 0.866
A1cf Mus musculus ENSMUSG00000052595 I 0.861
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.861
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.861
A1CF Monodelphis domestica ENSMODG00000016478 I 0.861
A1CF Anolis carolinensis ENSACAG00000015269 I 0.856
A1CF Macropus eugenii ENSMEUG00000015909 I 0.851
A1CF Echinops telfairi ENSETEG00000012527 I 0.847
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.842
A1CF Homo sapiens ENSG00000148584 D 0.837
A1CF Pan troglodytes ENSPTRG00000002508 I 0.837
AAH74127 Xenopus laevis AAH74127 I 0.837
A1CF Canis familiaris ENSCAFG00000015581 I 0.827
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.796
A1CF Vicugna pacos ENSVPAG00000006130 I 0.782
A1cf Dipodomys ordii ENSDORG00000016548 I 0.772
A1CF Ochotona princeps ENSOPRG00000010667 I 0.741
A1CF Sorex araneus ENSSARG00000005940 I 0.739
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.725
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.721
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.716
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.708
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.706
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.706
ENSCSAVG00000009923 Ciona savignyi ENSCSAVG00000009923 N 0.701
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.701