ENSCSAVG00000000326 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000000326 T35934_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.727
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.727
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000000582 RRM 74 142
ENSCSAVP00000000582 RRM 154 219
ENSCSAVP00000000582 RRM 249 313
ENSCSAVP00000000583 RRM 56 124
ENSCSAVP00000000583 RRM 136 201
ENSCSAVP00000000583 RRM 231 295

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.960
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.757
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.752
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.748
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.748
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.748
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.748
RBM47 Sus scrofa ENSSSCG00000008796 I 0.738
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.738
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.738
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.738
RBM47 Echinops telfairi ENSETEG00000009194 I 0.738
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.738
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.738
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.738
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.733
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.733
RBM47 Procavia capensis ENSPCAG00000011879 I 0.733
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.733
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.733
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.733
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.733
RBM47 Sorex araneus ENSSARG00000001735 I 0.733
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.733
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.733
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.733
RBM47 Homo sapiens ENSG00000163694 I 0.733
RBM47 Felis catus ENSFCAG00000012399 I 0.733
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.733
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.733
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.728
RBM47 Danio rerio ENSDARG00000061985 I 0.728
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.728
RBM47 Oryzias latipes ENSORLG00000005847 I 0.728
Rbm47 Mus musculus ENSMUSG00000070780 I 0.728
Rbm46 Mus musculus ENSMUSG00000033882 I 0.723
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.723
RBM46 Bos taurus ENSBTAG00000001696 I 0.723
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.723
LOC100063743 Equus caballus ENSECAG00000004400 I 0.723
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.721
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.719
RBM46 Equus caballus ENSECAG00000007649 I 0.719
RBM46 Homo sapiens ENSG00000151962 D 0.718
RBM46 Echinops telfairi ENSETEG00000014902 I 0.718
RBM46 Canis familiaris ENSCAFG00000008473 I 0.718
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.718
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.718
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.718
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.718
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.718
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.718
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.718
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.718
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.718
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.718
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.718
RBM46 Sorex araneus ENSSARG00000006520 I 0.718
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.718
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.718
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.718
RBM46 Sus scrofa ENSSSCG00000008994 I 0.718
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.718
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.718
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.716
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.715
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.714
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.713
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.713
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.713
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.708
RBM46 Felis catus ENSFCAG00000009246 I 0.708
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.704
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.703
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.703
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.703