A1CF (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000001982 T42204_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.887
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.824
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004572 RRM 59 128
ENSTRUP00000004572 RRM 139 205
ENSTRUP00000004572 RRM 234 298
ENSTRUP00000004573 RRM 59 128
ENSTRUP00000004573 RRM 139 205
ENSTRUP00000004573 RRM 234 298

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.951
a1cf Danio rerio ENSDARG00000002968 I 0.931
A1CF Oryzias latipes ENSORLG00000013342 I 0.926
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.916
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.887
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.886
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.882
A1CF Sus scrofa ENSSSCG00000010431 I 0.881
A1CF Bos taurus ENSBTAG00000021195 I 0.876
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.876
A1CF Loxodonta africana ENSLAFG00000015462 I 0.876
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.876
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.876
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.873
A1CF Macaca mulatta ENSMMUG00000007077 I 0.871
A1CF Equus caballus ENSECAG00000010424 I 0.871
A1CF Cavia porcellus ENSCPOG00000009807 I 0.871
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.871
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.871
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.866
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.866
A1cf Mus musculus ENSMUSG00000052595 I 0.866
A1CF Anolis carolinensis ENSACAG00000015269 I 0.856
AAH74127 Xenopus laevis AAH74127 I 0.856
A1CF Macropus eugenii ENSMEUG00000015909 I 0.851
A1CF Monodelphis domestica ENSMODG00000016478 I 0.851
A1CF Echinops telfairi ENSETEG00000012527 I 0.842
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.828
A1CF Canis familiaris ENSCAFG00000015581 I 0.827
A1CF Homo sapiens ENSG00000148584 D 0.824
A1CF Pan troglodytes ENSPTRG00000002508 I 0.824
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.801
A1CF Vicugna pacos ENSVPAG00000006130 I 0.792
A1cf Dipodomys ordii ENSDORG00000016548 I 0.777
A1CF Sorex araneus ENSSARG00000005940 I 0.725
A1CF Ochotona princeps ENSOPRG00000010667 I 0.723
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.718
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.718
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.718
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.718
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.718
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.718
RBM47 Procavia capensis ENSPCAG00000011879 I 0.714
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.714
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.714
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.714
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.714
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.714
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.714
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.714
RBM47 Echinops telfairi ENSETEG00000009194 I 0.714
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.714
RBM47 Homo sapiens ENSG00000163694 I 0.714
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.709
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.709
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.709
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.709
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.709
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.709
RBM47 Sus scrofa ENSSSCG00000008796 I 0.709
RBM47 Sorex araneus ENSSARG00000001735 I 0.709
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.709
Rbm47 Mus musculus ENSMUSG00000070780 I 0.709
RBM47 Felis catus ENSFCAG00000012399 I 0.709
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.707
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.707
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.706
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.706
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.704
LOC100063743 Equus caballus ENSECAG00000004400 I 0.704
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.704
RBM47 Oryzias latipes ENSORLG00000005847 I 0.704
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.704
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.704
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.704
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.702
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.700