A1CF (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCHOG00000009089 T35305_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.946
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.936
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.709
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000008042 RRM 61 130
ENSCHOP00000008042 RRM 141 207
ENSCHOP00000008042 RRM 236 300

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Equus caballus ENSECAG00000010424 I 0.995
A1CF Sus scrofa ENSSSCG00000010431 I 0.990
A1CF Macaca mulatta ENSMMUG00000007077 I 0.990
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.990
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.990
A1CF Loxodonta africana ENSLAFG00000015462 I 0.990
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.985
A1CF Bos taurus ENSBTAG00000021195 I 0.985
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.985
A1CF Cavia porcellus ENSCPOG00000009807 I 0.985
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.980
A1cf Mus musculus ENSMUSG00000052595 I 0.975
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.970
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.955
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.951
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.946
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.946
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.941
A1CF Echinops telfairi ENSETEG00000012527 I 0.941
A1CF Canis familiaris ENSCAFG00000015581 I 0.941
A1CF Pan troglodytes ENSPTRG00000002508 I 0.936
A1CF Homo sapiens ENSG00000148584 D 0.936
A1CF Monodelphis domestica ENSMODG00000016478 I 0.921
A1CF Macropus eugenii ENSMEUG00000015909 I 0.921
A1CF Anolis carolinensis ENSACAG00000015269 I 0.916
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.903
a1cf Danio rerio ENSDARG00000002968 I 0.901
A1cf Dipodomys ordii ENSDORG00000016548 I 0.886
A1CF Vicugna pacos ENSVPAG00000006130 I 0.881
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.876
A1CF Oryzias latipes ENSORLG00000013342 I 0.871
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.871
AAH74127 Xenopus laevis AAH74127 I 0.871
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.868
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.817
A1CF Ochotona princeps ENSOPRG00000010667 I 0.812
A1CF Sorex araneus ENSSARG00000005940 I 0.799
A1CF Felis catus ENSFCAG00000011179 I 0.762
A1CF Microcebus murinus ENSMICG00000003377 I 0.752
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.727
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.713
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.709
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.709
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.709
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.709
RBM46 Equus caballus ENSECAG00000007649 I 0.709
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.707
RBM46 Canis familiaris ENSCAFG00000008473 I 0.704
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.704
RBM46 Echinops telfairi ENSETEG00000014902 I 0.704
RBM46 Homo sapiens ENSG00000151962 D 0.704
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.704
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.704
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.704
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.704
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.704
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.704
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.704
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.704
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.704
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.704
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.704
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.704
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.704
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.704
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.704
RBM46 Sus scrofa ENSSSCG00000008994 I 0.704
RBM46 Sorex araneus ENSSARG00000006520 I 0.704
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.702
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.701
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.701