e_gw.262.16.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.262.16.1 T50171_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.714
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.714
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.714
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.262.16.1 RRM 61 130
e_gw.262.16.1 RRM 141 206
e_gw.262.16.1 RRM 236 301

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.817
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.812
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.788
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.764
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.764
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.757
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.752
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.745
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.745
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.735
A1CF Loxodonta africana ENSLAFG00000015462 I 0.732
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.732
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.730
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.730
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.730
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.730
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.730
RBM47 Echinops telfairi ENSETEG00000009194 I 0.730
RBM47 Felis catus ENSFCAG00000012399 I 0.730
RBM47 Homo sapiens ENSG00000163694 I 0.730
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.730
Rbm47 Mus musculus ENSMUSG00000070780 I 0.730
RBM47 Sorex araneus ENSSARG00000001735 I 0.730
RBM47 Sus scrofa ENSSSCG00000008796 I 0.730
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.730
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.730
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.730
RBM46 Equus caballus ENSECAG00000007649 I 0.730
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.730
RBM47 Procavia capensis ENSPCAG00000011879 I 0.730
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.730
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.730
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.730
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.730
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.730
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.730
RBM46 Bos taurus ENSBTAG00000001696 I 0.730
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.730
A1CF Cavia porcellus ENSCPOG00000009807 I 0.727
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.727
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.727
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.727
A1CF Sus scrofa ENSSSCG00000010431 I 0.727
A1CF Macaca mulatta ENSMMUG00000007077 I 0.727
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.727
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.725
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.725
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.725
Rbm46 Mus musculus ENSMUSG00000033882 I 0.725
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.725
RBM46 Canis familiaris ENSCAFG00000008473 I 0.725
RBM46 Sorex araneus ENSSARG00000006520 I 0.725
RBM46 Sus scrofa ENSSSCG00000008994 I 0.725
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.725
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.725
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.725
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.725
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.725
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.725
A1CF Oryzias latipes ENSORLG00000013342 I 0.725
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.725
RBM46 Homo sapiens ENSG00000151962 D 0.725
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.725
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.725
RBM46 Echinops telfairi ENSETEG00000014902 I 0.725
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.725
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.725
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.723
A1CF Bos taurus ENSBTAG00000021195 I 0.722
A1CF Equus caballus ENSECAG00000010424 I 0.722
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.722
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.722
A1cf Mus musculus ENSMUSG00000052595 I 0.722
RBM47 Danio rerio ENSDARG00000061985 I 0.721
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.721
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.721
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.721
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.721
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.721
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.721
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.721
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.720
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.717
AAH74127 Xenopus laevis AAH74127 I 0.717
a1cf Danio rerio ENSDARG00000002968 I 0.717
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.717
e_gw1.60.73.1 Lottia gigantea e_gw1.60.73.1 N 0.717
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.716
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.716
RBM47 Oryzias latipes ENSORLG00000005847 I 0.716
A1CF Monodelphis domestica ENSMODG00000016478 I 0.716
LOC100063743 Equus caballus ENSECAG00000004400 I 0.716
RBM46 Felis catus ENSFCAG00000009246 I 0.716
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.714
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.714
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.712
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.711
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.711
A1CF Macropus eugenii ENSMEUG00000015909 I 0.711
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.709
A1CF Homo sapiens ENSG00000148584 D 0.709
A1CF Pan troglodytes ENSPTRG00000002508 I 0.709
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.709
A1CF Echinops telfairi ENSETEG00000012527 I 0.707
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.707
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.706
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.706
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.702
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.701