CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM22
(
Ornithorhynchus anatinus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSOANG00000002314
T00572_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000003670
CCCH ZF
163
185
HICSFWVKGECKRGEECPYRHEK
ENSOANP00000003670
RRM
234
302
LYVGGLGDTITETDLRNHFLLRDGMGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN
Links
Other
CCCH ZF,RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCHOG00000013522
Choloepus hoffmanni
ENSCHOG00000013522
N
0.935
RBM22
Callithrix jacchus
ENSCJAG00000020963
N
0.935
RBM22
Cavia porcellus
ENSCPOG00000001946
N
0.935
ENSCHOG00000004192
Choloepus hoffmanni
ENSCHOG00000004192
N
0.935
RBM22
Canis familiaris
ENSCAFG00000018082
N
0.935
RBM22_BOVIN
Bos taurus
ENSBTAG00000030366
N
0.935
RBM22
Oryctolagus cuniculus
ENSOCUG00000011532
N
0.935
RBM22
Dasypus novemcinctus
ENSDNOG00000011166
N
0.935
Rbm22
Dipodomys ordii
ENSDORG00000005329
N
0.935
RBM22
Macaca mulatta
ENSMMUG00000020683
N
0.935
Rbm22
Mus musculus
ENSMUSG00000024604
N
0.935
RBM22
Loxodonta africana
ENSLAFG00000006638
N
0.935
RBM22
Gorilla gorilla
ENSGGOG00000012947
N
0.935
ENSEEUG00000005638
Erinaceus europaeus
ENSEEUG00000005638
N
0.935
RBM22
Homo sapiens
ENSG00000086589
N
0.935
RBM22
Anolis carolinensis
ENSACAG00000014750
N
0.935
RBM22_BOVIN
Bos taurus
ENSBTAG00000035397
N
0.935
RBM22
Pan troglodytes
ENSPTRG00000017423
N
0.935
RBM22
Pteropus vampyrus
ENSPVAG00000014231
N
0.935
RBM22
Tursiops truncatus
ENSTTRG00000012778
N
0.935
ENSPPYG00000015955
Pongo pygmaeus
ENSPPYG00000015955
N
0.935
ENSOPRG00000008481
Ochotona princeps
ENSOPRG00000008481
N
0.935
RBM22
Procavia capensis
ENSPCAG00000015091
N
0.935
Rbm22
Rattus norvegicus
ENSRNOG00000019235
N
0.924
RBM22
Meleagris gallopavo
ENSMGAG00000006298
N
0.924
RBM22_CHICK
Gallus gallus
ENSGALG00000004555
N
0.924
RBM22
Taeniopygia guttata
ENSTGUG00000000850
N
0.924
ENSCHOG00000001041
Choloepus hoffmanni
ENSCHOG00000001041
N
0.924
ENSMLUG00000003461
Myotis lucifugus
ENSMLUG00000003461
N
0.913
RBM22
Monodelphis domestica
ENSMODG00000009574
N
0.913
rbm22
Xenopus tropicalis
ENSXETG00000020435
N
0.891
AAH45067
Xenopus laevis
AAH45067
N
0.880
Q7ZXB5
Xenopus laevis
Q7ZXB5
N
0.880
ENSMODG00000006398
Monodelphis domestica
ENSMODG00000006398
N
0.870
RBM22
Oryzias latipes
ENSORLG00000004975
N
0.826
RBM22
Danio rerio
ENSDARG00000010238
N
0.826
ENSMEUG00000009348
Macropus eugenii
ENSMEUG00000009348
N
0.815
RBM22
Gasterosteus aculeatus
ENSGACG00000018027
N
0.815
RBM22
Takifugu rubripes
ENSTRUG00000004724
N
0.815
estExt_fgenesh2_pm.C_1790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1790010
N
0.772
gw.38.22.1
Branchiostoma floridae
gw.38.22.1
N
0.772
RBM22
Vicugna pacos
ENSVPAG00000002066
N
0.761
e_gw1.462.21.1
Capitella teleta
e_gw1.462.21.1
N
0.720
amel4_ncbi_hmm34588
Apis mellifera
amel4_ncbi_hmm34588
N
0.717
PHUM268310
Pediculus humanus
PHUM268310
N
0.707