CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMLUG00000003461
(
Myotis lucifugus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMLUG00000003461
T00549_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000003143
CCCH ZF
138
160
HICSFWVKGECKRGEECPYRHEK
ENSMLUP00000003143
RRM
209
274
LYVGGLGNTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLH
Links
Other
CCCH ZF,RRM
family RBPs
Other
Myotis lucifugus
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCHOG00000004192
Choloepus hoffmanni
ENSCHOG00000004192
N
0.978
ENSCHOG00000013522
Choloepus hoffmanni
ENSCHOG00000013522
N
0.978
RBM22
Canis familiaris
ENSCAFG00000018082
N
0.978
RBM22_BOVIN
Bos taurus
ENSBTAG00000035397
N
0.978
RBM22
Anolis carolinensis
ENSACAG00000014750
N
0.978
RBM22_BOVIN
Bos taurus
ENSBTAG00000030366
N
0.978
RBM22
Callithrix jacchus
ENSCJAG00000020963
N
0.978
RBM22
Cavia porcellus
ENSCPOG00000001946
N
0.978
RBM22
Gorilla gorilla
ENSGGOG00000012947
N
0.978
RBM22
Loxodonta africana
ENSLAFG00000006638
N
0.978
RBM22
Homo sapiens
ENSG00000086589
N
0.978
ENSEEUG00000005638
Erinaceus europaeus
ENSEEUG00000005638
N
0.978
RBM22
Dasypus novemcinctus
ENSDNOG00000011166
N
0.978
Rbm22
Dipodomys ordii
ENSDORG00000005329
N
0.978
RBM22
Tursiops truncatus
ENSTTRG00000012778
N
0.978
RBM22
Macaca mulatta
ENSMMUG00000020683
N
0.978
RBM22
Procavia capensis
ENSPCAG00000015091
N
0.978
ENSPPYG00000015955
Pongo pygmaeus
ENSPPYG00000015955
N
0.978
ENSOPRG00000008481
Ochotona princeps
ENSOPRG00000008481
N
0.978
RBM22
Oryctolagus cuniculus
ENSOCUG00000011532
N
0.978
Rbm22
Mus musculus
ENSMUSG00000024604
N
0.978
RBM22
Pan troglodytes
ENSPTRG00000017423
N
0.978
RBM22
Pteropus vampyrus
ENSPVAG00000014231
N
0.978
Rbm22
Rattus norvegicus
ENSRNOG00000019235
N
0.966
RBM22
Meleagris gallopavo
ENSMGAG00000006298
N
0.966
RBM22_CHICK
Gallus gallus
ENSGALG00000004555
N
0.966
RBM22
Taeniopygia guttata
ENSTGUG00000000850
N
0.966
ENSCHOG00000001041
Choloepus hoffmanni
ENSCHOG00000001041
N
0.966
RBM22
Monodelphis domestica
ENSMODG00000009574
N
0.955
rbm22
Xenopus tropicalis
ENSXETG00000020435
N
0.933
AAH45067
Xenopus laevis
AAH45067
N
0.921
Q7ZXB5
Xenopus laevis
Q7ZXB5
N
0.921
RBM22
Ornithorhynchus anatinus
ENSOANG00000002314
N
0.913
ENSMODG00000006398
Monodelphis domestica
ENSMODG00000006398
N
0.910
ENSMEUG00000009348
Macropus eugenii
ENSMEUG00000009348
N
0.867
RBM22
Danio rerio
ENSDARG00000010238
N
0.856
RBM22
Oryzias latipes
ENSORLG00000004975
N
0.856
RBM22
Gasterosteus aculeatus
ENSGACG00000018027
N
0.844
RBM22
Takifugu rubripes
ENSTRUG00000004724
N
0.844
RBM22
Vicugna pacos
ENSVPAG00000002066
N
0.809
gw.38.22.1
Branchiostoma floridae
gw.38.22.1
N
0.800
estExt_fgenesh2_pm.C_1790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1790010
N
0.800
e_gw1.462.21.1
Capitella teleta
e_gw1.462.21.1
N
0.747
amel4_ncbi_hmm34588
Apis mellifera
amel4_ncbi_hmm34588
N
0.733
e_gw1.11.24.1
Lottia gigantea
e_gw1.11.24.1
N
0.733
PHUM268310
Pediculus humanus
PHUM268310
N
0.722
ISCW021094
Ixodes scapularis
ISCW021094
N
0.722
gw.351.5.1
Nematostella vectensis
gw.351.5.1
N
0.700